G115949


Basic Information

Item Value
gene id G115949
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9200800 ~ 9215817 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU145202
TAAAAAGGTTTCAGTCAGCAACTCTAACTAAGAGTTCACATAAGCATTTGTGAGCTGAGGTAGAAAGAAACCAGGAGAGACAGGGGAACAGGGTTGAAAATGCCGGCACTAAGGGAAGGAACTTTGAGAGCAGCTATGACATGAAGATGTACCAGTTAATTGTGCAGTAAAGTCCtgtcctgtttgttttatgttttcgtTGTTTTTGTgggcattttaatatttctgttatttgttttaagcaGACGTGTTGTGCTCTGTAACGTTCGGTCTTGTTTATTcctgtttaatatgtttaatatgtatttaagtaGGGGAGCCCACTGGACCTTTCTGTTGTGGCGTGGTCTCCTGTTTGAATATTTTTCAGTCGGGGTAAAAAGGAGAGCCAGTAGTGAGTGTGACAATTCAGTTCAGGGTTAGTAAAAACTGGCGCCTGCTAAGTGTTCAAGGCCTTTTTAATTCATACCAACAAACACTGCGACTTTGTGTACTTTATAATGGAAAAGTCACCGAGATCTGTAGAAGATGTTATTCATcatgtaaaacagttttttaattgtaagaaGGATGGCCACAGGAATGTTTTGGTCTTGTGTTGACTGATTGTCTACTGATTCCCAGGCCTGTTCCTTTTGATTCTGTTTATGAAAATGATACAACATGTACACAATCAGCCATCTGACTTGATGTACTATTTTTGCAATGCTTCCATTCAGtcaattattcatattaatggaCATAGTTTGCACCAGTCTGATAGTGATTTCCAGGGCTGAAACATCTTTTCAGAAAGCATGCACAAGTGAAGTAGTTAAAAGCATTTCTTCACGGTAACTGTTCAGGTGGAAACCCTAACTGTGACCAAGGACAGACCTCTTCTGCTGTAAAAGTAAATTTGCATGAGAGCTGTCATGCCATCCTGCCCCCCTGCATGACATCATTATAATCTGGTGCAGGCTTTGCTCTCGCCATATGTCCAGTCTGTGCGGTGAATCTAATGTGTGTCACTGACTGCACTGCCCTGTTCAGCATCTGTTCACTGCGTCTTGCCACATAGGCTCAAGGGAGATTACTGACCAGCCTGTtcatattcttgttttttttttatactgttgATAATGAAAGTGGACAATAAGCATAGGCCCTCatggaattttaaaataatgattgtgttataatgtatatatttccttGTCTTTTGCTGTAACTGATTCATAGTACACTTAGCATGGGAACTGTTTTTTAACATACTGTTTGTCCCTGTCGCTTGCCGTAGGTacactaaaaacaaaagccttcTTAACGGGTACCAGATCCTGGGAGAGACCTCGACATTACGCTTTCTTACTGAGGCAGTGCTTACCCTCGGTAGAAGGTGTGACATTTTCATCTGTTAGGCCTCACCGCTAAATATCTGCTCCTCTGTTTTGGGTCTTTCACTGAGGACCACCACTAAAATCCAGGTGGTGGAGGATGTCTgttttatatactttatatagaGAACCAAAATCTGTCTTAAAGAGAATCAGAAAGTGCTTTACTCAGGTGGGGTTGGTGAACATGACATTCACAGAGCTACGTTAGCATCCAAAAGCACCCTTGATTACCACTGAGGTTTTAGTTAATTATGAATGTGATGTAGGTCAAGACCTACCAGCTAGAAGTGAAAGGGTATTCACCATTGTGCTAGGTTTATATCTACTTTTTGCACCTGAAATGAAAATCGGGAGGTTTCATCATTAACGCCACAGGTGGATTCACAAGATCTCTTTAATAGACATCTGTTACTAATCAGCCACGCTTTTTTTGCTACTTGTGTTGTGAATAATACCTGTCGTGGTTTTCTACATACCAATggtaatgtttaaacaaaaaaacgaaaacaaaaaaataaaatgtacagccGTGCTCTTCTCAGACTCGGCtgcgtttgtttttgtttttagtctgAGAAGAACTTGTGTTTCTGTCGCCCTCCACTCTAGCATTgtctcctcacacacacacacacacatgacattCACTGTCGCGTCCGTCTCTGTGTAGAGCAGTTCTGTCTGTgccttccccctccccccctgcaGGCTGCCTACTCACCAGCTTTGTGTAAAGCCTGCTATTTACTTCACGACAAGGTGGTCTAGAACTGTGGGCTCAGAACCTAGGCTCCACTTGAACCGATCTCCATTTGCAGACCTGTCTCATGGAACTTGACCTGACACGGCTGACTTTGTGAATTAAAGATCCAATCCTGCAGGCGCATACCGTTGAAGATCGCTGGTAGCGCATCCTCTTCTTAAATCGAATATGGAGCCCGCAGGGTTTCCCCTGTCAGAGGACGCTGGCTGTaaattgtctgttttaattgtttcgTTCTTGCCATGGGCTGCAATTGCTTATTGCCAAGTGAAGTTTGAGTTTTCATATTAAGTGTTCAAGCGTTCAACTTCACCGCCTTCGATACCCCTAACCCACctgtataatgtatatagtaTGCAGTCCAAGAAGTAAGaagttgtaaatgtataatgcatCGACTGTCAATGGAACATATCCATTGGAAGTATATCTTAAATAATGTATGGGACGGGAGCACTAAAATATGGAGTCTACTGGATATGACAAACTGCAATGTTGTAGAGGGTTTTGGAATGCCATATTGTTTTTGTCCTGCTGTGTTACAAAACTAATAATTtctagaaacaaaatatttctacAGTAAGActtaatttactgtatttgatATTCAATCATCAATTAATCTCGCTAGATCAACATCCGGTGTTGAGTTTGACTCGGTTCACTCTGTAGTTCTGTGCTTCCATCAGCAGTACTTACAGCATTTTAAGATGCCAACTTCAAATTGATCTAACTTTCAGTTGCAgtgcaagcacacacacatatctaagGTGGTCAAGCTGGAACTGTGGACTATACCAAGTCTTTTTGAATCAGTTTCTAGAAATAAggtgaaataaaggaaaaagagGTTGCTATACCTCCCAGTGTGTATTTCTTAAGATTAAGGGTTATAGAGATATTTTTGACTGTTGGATACCTAAATATAACCCGCTGAgctttatttttggtattttatttttaaaacagtttccagtgttaagtaatttatttatttatttatgtaatgtatttattttctaaataataattgctgttGTTAACTATCCAGCATGAACTATCCAGGAATCCTATCAACTGCACCTGATGAAAAATCTGATTATGATATCTAGTAAACATTGTCTGTAACTTGCAGTGCATGTTCATGCTTTTTATGAATATTTGCAAATCCAGGCTGGTCCCCATTGACTTTGTAAGCTCTAAACCTCTCTATATGCAACATTAAGTGGCTTGCAGTCTTGTGGAAAGGCAGTAAAGTTATTGCTGGGTTGAAGAGGCACAGATATTAATATCTTTAATCCAATCCATGGTATTCCATGTTTGTATTGATGTTGACATGTAAATTATACTATTGTGTAAAATGAATGACCACAACTGTTGCatagaatacaaaattattcttttaacaataataaaaacaaaacaatcaatgttatgcttctttttcttgtaatgcatttcaattatttatttgaaacactgAGACCTAGGTATATCAAGTTCTAGCAGCTTGTAGTAAATATAATCCTTCTGTTTAAGGCAAAAAAAGACTAGGAATTGTATTAGGTAGATCGATAATATACATACACGACTCTCATATTACTCATTACAATCTTTGACacgtttatttttaatatatattttttgcatccATGAAGTCATAATTGCAAGGTACTAAAGCTGCAACGTCTGTCCTTCATCTCAATAGCATGAAAGCGTTGTTCTGAGCCTCCCATCTGGACTACCATCtatcacagatttaaaaaacaaaaaaagcaaacccaATTCCAATTCCATCAGATGGTATCATCCTGTTACACACAATCCCTGTTTAGACCATTACTGGGATTACAGTGTGTGACGATTTACTCTTTATTATACTTAGCAGGCTTTGATGCATACCTTCATTGAAGTATGGAAGTGGGATTTtggtcaaacaaacaaaaactcgTATGGTTTCTCAACATCTTCCTGGTTGTATTGCAATAACAGTTCTCACTTCTAGGTGTTAAAGCATTATACTGCAAATAAAACCTTATTCGACACTTGAAAACAGCGGGGCTGAATAGCAGCTGGAGATGAGTCCGGGAATTGAAATCAGCAGTTTAATCTCTCCAGCGGTGCCCACAGATTTGGTTGCAGCACTTGTAGAAGGTGGTCATGGGCTCGTCGGCCGAGCGCGTCTGGATCTGCATGAAATAAGCCCGAGGGTGCTCACACTTCGGACAAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145202 True 4373 lncRNA 0.39 2 9200800 9215817

Neighbor

gene id symbol gene type direction distance location
AMCG00018363 snrnp25,cp033,LOC106601091,LOC101481050,LOC107703331 coding downstream 1332 9194038 ~ 9199468 (-)
AMCG00018362 NA coding downstream 7859 9190764 ~ 9192941 (-)
AMCG00018352 NA coding downstream 284773 8909747 ~ 8916027 (-)
AMCG00018353 NA coding downstream 295389 8824642 ~ 8905411 (-)
AMCG00018346 LOC104930119,LOC101486217,LOC102210124,LOC108246886,LOC106529451,LOC100701961 coding downstream 483398 8700411 ~ 8717402 (-)
AMCG00018367 NA coding upstream 144483 9360300 ~ 9380160 (-)
AMCG00018370 nprl3,LOC106601082,LOC106607369 coding upstream 231667 9447484 ~ 9470583 (-)
AMCG00018378 NA coding upstream 273113 9488930 ~ 9490012 (-)
AMCG00018379 NA coding upstream 276410 9492227 ~ 9493398 (-)
AMCG00018375 NA coding upstream 307678 9523495 ~ 9526055 (-)
G115874 NA non-coding downstream 338423 8861873 ~ 8862377 (-)
G115807 NA non-coding downstream 681597 8517334 ~ 8519203 (-)
G115732 NA non-coding downstream 767230 8430126 ~ 8433570 (-)
G115599 sept12,LOC107568113,LOC107690244,LOC107733855 non-coding downstream 1332174 7860316 ~ 7868626 (-)
G115596 NA non-coding downstream 1358092 7842337 ~ 7842708 (-)
G116058 NA non-coding upstream 265093 9480910 ~ 9482152 (-)
G116065 NA non-coding upstream 311675 9527492 ~ 9527736 (-)
G116136 NA non-coding upstream 568613 9784430 ~ 9788579 (-)
G116236 NA non-coding upstream 927608 10143425 ~ 10144599 (-)
G116255 NA non-coding upstream 947461 10163278 ~ 10163522 (-)
AMCG00018339 NA other downstream 523992 8666737 ~ 8676808 (-)
AMCG00018344 NA other downstream 551993 8641896 ~ 8648807 (-)
G115581 NA other downstream 1426908 7743218 ~ 7773892 (-)
AMCG00018291 NA other downstream 2548027 6610633 ~ 6652773 (-)
G115320 NA other downstream 3249745 5950421 ~ 5951055 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other upstream 23995 9239812 ~ 9258202 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other upstream 558489 9774306 ~ 9779545 (-)
G116165 NA other upstream 703229 9919046 ~ 9924582 (-)
AMCG00018416 usp42 other upstream 904782 10120599 ~ 10136769 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other upstream 1087237 10303054 ~ 10332982 (-)

Expression


Co-expression Network