G116136


Basic Information

Item Value
gene id G116136
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9784430 ~ 9788579 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU145444
GGGGGCACTCTGGTagagctaaaaaataaattaaataaaaagatacattttgataaaGTTTTAATGAATTTACATTGGATATACAGGAGGCTGACCAAAAGTAAAACCTTTTCCGAAGCCCATAAAACACTTGTTACAGAAACATGTCTAGACGATAAATATGAAGCAGTGAGCACAGCATGTTCTGTGGACAAAATCATGAAGGAATTGGGAccattttccctttgttttgttttttgctgccGTTGTTGAAAGAGCAACTAAAAAAATTCAAACGTCTGCTTCAATTCACAATTCATCCACAAATGGTGTGTTCCCCAGGTTTCCCTTTGCTGCCATGGACTTCTTGCCTGCAACAAATTTCTTTGCAGCCtGACCACGGCGTCTGCGGTCACAGCATCAATCTTCTGCAGCACAGCCTCGGCCGGGGCGTAGGCCCCTCCTGCCAGCGCCTGGGCACCCATCTCCTCCAGTATGCCCTCAGAGCTCTCCATTCCCATCAGGAAGCTTGCCTTCAGCTGGTTCCTGCAGAGCCACAAACAACAATGTAACCACCATCACTCATGCTGTACACCCCTGCTCTCATCCAGCCCACCGAACCGAGGCACATTTTGCACTGAAGCGCTTCAAATTGTCACGCATTTTTTAAGTTGTCAATTAAGTTGTGGTGTTTGGGGGAGGATGGATGGATGCGAGGCAAGGAATTCTGGGACAATAGGGTTTAAGGGTGGGATTAGGATCTGTCCCCTCTCCTGAAATTTCCTTTACAACTCCAAGAAAGCATGAAGCTCTACAGTGCTTTGAATGATCTCACTGCAGtgatattctatatatatacttaaagaAAAATTCCTACTcctcaatttgtattttatttttatacagctTGCAACATTCAAAAGTTCAGGTTGCTTGCCGAAATTTGCACCTCTTTACCGACTTTGCCCCAATTGCTGGAGTCAAAACCGTTTGAGATTATTAACAGCAAGACAACAAGGAGCGTGGAATTCACAGAAGATGAAACTTGATCAATAAATGTGCTGCTGGAGCAGATGTGTTACTGCGGTCCAGTACAAACATACTTGGCCCTGGTGACTTCAGCAGCATTGAGGCTCCCCTGGGCCACAGCCTTGACCTGAGCCACGGCCGCCTTGATGGCCTGTGGAGGGAAGGACAGTGAGTACCGGCACAGAGATGCAGTAACTTTTCCATGTCACTCTACAGCAGCTACTTCCTAGCATTACACTCAGCCAGACCCCTATTAAACACTGTCTCCAACTCCCAAAATGCTTCGGCATGTCTTTCAATTCGAAATATTGCATTACTATGTAAAGTAATGTGGTTTAGACTTTCAATTTAAGGTGTTTAAAATCATtagatcatatttttaatttacaacataaaaaaaaaaatgaaaccaaaatcaTCCTGACTTTGTGACACCATTTCTTTACGTTAAGACCCCAGAGCAGGGAACCACTGCTTTACAGTCTGGTCCTCCATCCCCACAGAGCAGCAGCCTCCCCACTCCTTTTCCACTTTGCTGTGATACTGCAGTAATGTAAGAGCACTACAGTTTGAAGAGCCAAAAGTAGCCAGTAACACTCACGTCTGCGGCTTGGCCTGCTTGGGAGACGGTGTAAAGGCCAAACAGCCCCGAGTCCGAATAGCTGGCATTGAAGGCTGAAAACGTCGAATGGCTGCGTGGTTGCCTTGGCAATACCCCGATAGAGTTTGCTGGTGGTGTTGCTGCCCCTCTTGATGTAGGGCCCTGCGCCCAAAAGGTGCTGCAGGACACTGAAGGCGTTGGCTTCTGGGCTGCCGGCTGCCACTCCCTCACTAACCACGGCCGCGTGCACAAGGCTGTCGCCGTTCTGCTCCCGCATCTCACCTGtgacacCCCCACGATACACCGCTGTGGCCCCCACTGCTCCAAAACCACTGCGGACATTCAGGAACTGCTCCCCCACCTGCTTCAGCACGGAGTGTTCCACCCAGGCCTACCAGGGCCATTCTGGAGCTGGTGAAATTGTTCTGGACGAAGGAGTGCAGCTGTGGAACATAAGACAGCAAAccgataaacaaacaaacaaataaataaataatagcacagatctgcacagacTGTAGTTTTGCATCTTACCTGCTCTGAAGTGATCTTGCCCACCATGTACTCTGGGCAGTACAGTGAGTTACAGAGGGCATTTTTATAAGCAGCTGCATGGAGGTTCTCAAGAACACCTAACGGAAACCAAAGAAAGCCTGTGTTACAGACAGATAAAAGCATGCAAAATTAATATGCGGCAACAGCAACACCGCAGAAAGCAATCTGCAGCCAACCCCTGCTGTATTCTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145444 True 2357 lncRNA 0.47 5 9784430 9788579

Neighbor

gene id symbol gene type direction distance location
AMCG00018394 NA coding downstream 17582 9761500 ~ 9766848 (-)
AMCG00018392 NA coding downstream 30278 9744999 ~ 9754152 (-)
AMCG00018391 NA coding downstream 50267 9731700 ~ 9734163 (-)
AMCG00018393 NA coding downstream 61529 9713318 ~ 9722901 (-)
AMCG00018381 dnah3 coding downstream 108750 9612982 ~ 9675680 (-)
AMCG00018403 NA coding upstream 156109 9944688 ~ 9960060 (-)
AMCG00018404 kdelr2,LOC103354828,LOC102232388,LOC100710456,LOC107091462,LOC104935524 coding upstream 184706 9973285 ~ 9980996 (-)
AMCG00018409 NA coding upstream 197595 9986174 ~ 10002150 (-)
AMCG00018408 NA coding upstream 215654 10004233 ~ 10014893 (-)
AMCG00018410 rac1a,rac1,LOC105026138,LOC107569188,LOC107596579,LOC106601744,LOC108437155 coding upstream 240923 10029502 ~ 10041516 (-)
G116065 NA non-coding downstream 256694 9527492 ~ 9527736 (-)
G116058 NA non-coding downstream 302278 9480910 ~ 9482152 (-)
G115949 NA non-coding downstream 568613 9200800 ~ 9215817 (-)
G115874 NA non-coding downstream 922053 8861873 ~ 8862377 (-)
G115807 NA non-coding downstream 1265227 8517334 ~ 8519203 (-)
G116236 NA non-coding upstream 354846 10143425 ~ 10144599 (-)
G116255 NA non-coding upstream 374699 10163278 ~ 10163522 (-)
G116256 NA non-coding upstream 380669 10169248 ~ 10169622 (-)
G116352 NA non-coding upstream 820439 10609018 ~ 10671019 (-)
G116355 NA non-coding upstream 949972 10738551 ~ 10739008 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other downstream 4885 9774306 ~ 9779545 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other downstream 526228 9239812 ~ 9258202 (-)
AMCG00018339 NA other downstream 1107622 8666737 ~ 8676808 (-)
AMCG00018344 NA other downstream 1135623 8641896 ~ 8648807 (-)
G115581 NA other downstream 2010538 7743218 ~ 7773892 (-)
G116165 NA other upstream 130467 9919046 ~ 9924582 (-)
AMCG00018416 usp42 other upstream 332020 10120599 ~ 10136769 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other upstream 514475 10303054 ~ 10332982 (-)
G116306 NA other upstream 546622 10335201 ~ 10342089 (-)
G116307 LOC108412765,LOC107713954,LOC107665916,LOC107691223,LOC107548703 other upstream 571550 10360129 ~ 10385216 (-)

Expression


Co-expression Network