G116301


Basic Information

Item Value
gene id G116301
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10350964 ~ 10351562 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU145662
GCGGATCCTGTGAGGAGATGCACTGGGGGAAAGCAGACAAATAGGTCTGTTTTGGCCACTGCAGTGAGATCTGAGTCCTCTTATGTAGCTTTCAGGGTGGAGTGGGACTTGGCTGATAATTCCACACTACATTAAGGGAGACTGAAGACCTTGATGGGTAGGCTGAGAGGAAGATGTACTCACCGTGTGCTCAGGAGAAGACTGTGCGCTCTTGAACATGGTGGCCCTCTTCGGTGTGGGGTCTGCGTAGTCTGGTGGGGGCAGCACCATGGCCCCCTGGTCCTGCTCGGTGAGGTTAGCTACACTGGCACTGCGGACTGGGGCAGCATTGCTGTGGAGGGCAAAACGTTTCATAACAGCCAGTTATAACAGAGCCTCCTCAATTAATAGCCCCCTCTAAAGATGTTCTACAGCGCCCCAAAGTCATAGTAACAGTAGAACCTGGAGGGATTGCCTTGCTAtaggtattttgtttaaaataaatctagtcaatgcagaaataaaaaatggtggTATTTTCTACTttattctgttaaaataatgtcacTGGGCAAGAGAAACAAGTAAAAGACAAATGCCCCAAAAAGCAGCTACTTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145662 True 599 lncRNA 0.48 1 10350964 10351562

Neighbor

gene id symbol gene type direction distance location
AMCG00018423 bri3 coding upstream 8540 10333521 ~ 10342424 (+)
AMCG00018425 NA coding upstream 51410 10299003 ~ 10299554 (+)
AMCG00018411 NA coding upstream 176668 10160464 ~ 10174296 (+)
AMCG00018414 pms2 coding upstream 191321 10150965 ~ 10159643 (+)
AMCG00018413 NA coding upstream 200191 10137980 ~ 10150773 (+)
AMCG00018426 NA coding downstream 80628 10432190 ~ 10440657 (+)
AMCG00018429 trrap,LOC107699870 coding downstream 145311 10496873 ~ 10562962 (+)
AMCG00018432 trrap coding downstream 223334 10574896 ~ 10609128 (+)
AMCG00018434 NA coding downstream 573474 10925036 ~ 10934367 (+)
AMCG00018435 LOC107699871,LOC105888715,LOC106589575,LOC106609787,LOC108274201,LOC107669229 coding downstream 607003 10958565 ~ 10975479 (+)
G116300 NA non-coding upstream 5882 10344735 ~ 10345082 (+)
G116264 NA non-coding upstream 134175 10215387 ~ 10216789 (+)
G116214 NA non-coding upstream 229406 10120177 ~ 10121558 (+)
G116199 NA non-coding upstream 309131 10032553 ~ 10041833 (+)
G116088 NA non-coding upstream 603577 9689765 ~ 9747387 (+)
G116302 NA non-coding downstream 4410 10355972 ~ 10357357 (+)
G116303 NA non-coding downstream 8120 10359682 ~ 10359903 (+)
G116354 NA non-coding downstream 386724 10738286 ~ 10739175 (+)
G116358 NA non-coding downstream 625460 10977022 ~ 10979685 (+)
G116374 NA non-coding downstream 710007 11061569 ~ 11083789 (+)
AMCG00018422 NA other upstream 58703 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 304441 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 338291 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 738046 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 786400 9562061 ~ 9564564 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 900797 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 1614685 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 2137905 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 2151461 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 2191983 12543545 ~ 12611879 (+)

Expression


Co-expression Network