G116306


Basic Information

Item Value
gene id G116306
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10335201 ~ 10342089 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU145667
TGctcatgacattttatttacagtgcttttctgatatataaaaaaaagtgtttactTCATTCATAATAGCAAGTAGTGTGCTTCAAAGCAAAGCCTGTAGCCCTGAAGCATttttaacaattacaattatgttAACATACAAGATActgacaaacacaacacaatagaGTATGTCCTCACATACTTTAATGTGGCAAGCTCTCACACAGAGAATAGTACTCTTAAAACTTGTGTGGGCGAACGTTGATtgtctttgaaagaaaaacgACTGTCCGCTAGTTGTAGTTGACGAGAAAACATGGGTTACCAGAAAGTCTATGAAGATGTATGTTTCGCTTGTTCGAGACATTAAGGATGAGAAAAAGACTCCTGAATGTGTATTGACCCTGCAGAACCCAAGATGCATTTACAGTGGCACTTCAGGCAggtttggaagaaaaaaaactgccgGGGTTCTGAAAAGGCTTCagttactttaaataaaaataaaaaatgataattacgaaacaaaaacaaaaaatcagtgCAGATGTAGCATGGCCCCAGACCAGATGGCAGCTGTGGAAAACTGCTCTGGTTATAGCAAGTCAAATTGTTTGTGACATTGTTGAGagatttaacaaaacataaatgagaagaacaaaaaaaaaaaaaaacacagggagTACCAATCAGCTGTAGTCAATCTTACAGAACATAACCCAGCTGAGAATGAACCGTATGGCAAAGCATTTCTCATCAGCATTTACGGCTGCAATGAACTCTGACCTGTACAGGTGGTGAGCTTTACTCTCAGCTCTTTAACACACTGAGACGATAGACTCCCCTATGTGCATGACATGGCCGATACAAACTCCTGGCCCGCTACAGCCAGAAGAAAAAGCTGGGCGTGATGTCACACATTGGTGACGAGGTACTCCCTGTATCGGcgagtctcttactgtacatgGTAGCAGCTGCTGTCCTTTGTCATGCTTGCGTCAATGTATGTACAATACGCACAAGGCCGAAAGACAGATTAAGATACCTCGATTTGCAAGAAAAATTGATCCCTACCTTTTGAAAAAAAGGTCAGCATTGCTCTGCTATTTTTGggtgtttttaaacatacagaaaTGGGAATCTCTCTATAGCCCCCTAGAACTCTGCATCAGGCTTTTACAGTCCTGCTTCTTGACTAGCAATGGTGTTCTGGAACTCAGCAGCAAGTCCaactttaatgtaaaataaagggTATCGTATTAAACAGTGCAGGCTGCAGTAAACCCAAATAACACAGTGGAAGAAAAGAGCGCTTCAGGCCAGAATCGCATTAATTTTCATTTGGAACGCAAAACACTCCCCAAAAATTATTGGTGCAgtccaaaaccaaacaaatatttaaattgtatgccATGTAACCAAAACCTGTGgggggattgtgtgtgtgtgtaaaggcaccattgactgactgacaaatACAGGAAGGAATCTGGGAATTTATAAGTTTacatggatttaaaataaaaaataaactcttatTTCATACATTGtgtccgggggggggggggNNNNNNNNNNNNGAGAAAAGCTCACatgctcttttaaaaataattagtcTTGCCATGACGACCTATAGAGACTTCTTCAGTAGGACATACATGGCACTGAttgtaacaaacaaaagaaaacaattagaaCAGTATAAAGTGGTACAGGTTGGACTTGAAAACAAGCCGAAGAGTTTGATCCCTCTAACCAAAGGTGGCCCCGCAGTTGGGACACCTCCTCTGGCGCAGAGCAAGGCAGAACAGGATGCCGATGGGAAAGAAGACGATGGCACACAGGATCCCCAAGCAGGTGAAGTCGTCCTCCAGCACCGTAGTTCTGCTGTTGCCCGTATTCATACCCCGCGGGCGCGGCGTTGTAAGCCGGGGGTCTGTCTTGCAGGAGCGGCTTGCTATCCATATCCGAGTGCGACGTGTTGATTGGTTTCCCCTCCTCCTAAATTACGGCGCGCACACAATTTGGCTAATCCCTGCCTCGGTTGTCGTGAGACGCATAGGCCACTCGATGGAGaaacacaaactacacacaaaaaagtgaaaataaaatgagtgcTGTGGGAGGAACGGGAAACTTCAATCAACCCCCGCCTATGCAGCTTCaactttctccctctcctcgcTTCTGGATGCAGCGCGGCTACTTCAGCTGCTCCACCGCCGGGATCCCGGAAAGGTCTAAATTGTCGTCATGTTTTCTTATGTCCCCTTCTTCTTCTGCCTAGATTTGTCTATTATCTGTATCTCCAGTTCGAGAGATTTCCCGCAACTCTGTAGCAAACtctcttgaaaaaaaaaatgggtttCCTGAGGTCGGGCCAGTCACAAGACAGCAGTCATGTGATGCGCAGTCGGGCGCTTCGGACGAGAGCAGCCGCTCTTAAAGCTGCAGTCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145667 True 2441 TUCP 0.43 2 10335201 10342089

Neighbor

gene id symbol gene type direction distance location
AMCG00018420 NA coding downstream 104000 10223672 ~ 10231201 (-)
AMCG00018419 LOC108273406,LOC108431966,LOC107724689 coding downstream 116713 10202779 ~ 10218488 (-)
AMCG00018421 pvalb8,LOC103030409,LOC108412252,LOC103372314,LOC107548708,LOC107691229,LOC103141687,LOC107724728 coding downstream 136796 10196209 ~ 10198405 (-)
AMCG00018418 ccz1,LOC103028980 coding downstream 145843 10174420 ~ 10189358 (-)
AMCG00018417 NA coding downstream 184692 10147532 ~ 10150509 (-)
AMCG00018427 NA coding upstream 53 10342142 ~ 10366255 (-)
AMCG00018428 baiap2l1,LOC106601829,LOC108412765,LOC106601826 coding upstream 35204 10377293 ~ 10384857 (-)
AMCG00018430 NA coding upstream 143084 10485173 ~ 10492963 (-)
AMCG00018439 tom1l2 coding upstream 749207 11091296 ~ 11118823 (-)
AMCG00018438 atpaf2,LOC102781490 coding upstream 798000 11140089 ~ 11142854 (-)
G116256 NA non-coding downstream 165579 10169248 ~ 10169622 (-)
G116255 NA non-coding downstream 171679 10163278 ~ 10163522 (-)
G116236 NA non-coding downstream 190602 10143425 ~ 10144599 (-)
G116136 NA non-coding downstream 546622 9784430 ~ 9788579 (-)
G116065 NA non-coding downstream 807465 9527492 ~ 9527736 (-)
G116352 NA non-coding upstream 266929 10609018 ~ 10671019 (-)
G116355 NA non-coding upstream 396462 10738551 ~ 10739008 (-)
G116365 NA non-coding upstream 628791 10970880 ~ 10971087 (-)
G116367 NA non-coding upstream 631006 10973095 ~ 10973307 (-)
G116368 NA non-coding upstream 635133 10977222 ~ 10979678 (-)
AMCG00018424 tecpr1,LOC102784946,LOC103372311 other downstream 2219 10303054 ~ 10332982 (-)
AMCG00018416 usp42 other downstream 198432 10120599 ~ 10136769 (-)
G116165 NA other downstream 410619 9919046 ~ 9924582 (-)
AMCG00018390 snu13,LOC101154660,LOC105910236 other downstream 555656 9774306 ~ 9779545 (-)
AMCG00018364 ubald1,LOC105031098,LOC105928896,LOC106589553,LOC103131586 other downstream 1076999 9239812 ~ 9258202 (-)
G116307 LOC108412765,LOC107713954,LOC107665916,LOC107691223,LOC107548703 other upstream 18040 10360129 ~ 10385216 (-)
AMCG00018431 trrap other upstream 220465 10562554 ~ 10580105 (-)
AMCG00018437 srebf1,LOC107713935 other upstream 719539 11061628 ~ 11083780 (-)
AMCG00018440 NA other upstream 746085 11088174 ~ 11146940 (-)
G116428 NA other upstream 857489 11199578 ~ 11202888 (-)

Expression


Co-expression Network