G116354


Basic Information

Item Value
gene id G116354
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10738286 ~ 10739175 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU145722
atttatatttaagaaaactaaatgatattacacattctagagttatgaatcattaattgatttctcaaatgtcataaATGatgaactccaaactgttaaacttatctgaacttcgtcgcagagaggcctcgggcttcgggctcagataacagcacacggcacgaggtccgtgtggttgggaacaaaggcagtccggttcggctttgtccaagaacttccactcagtcgatgcacctggaactTGGGGTTTGGCGaatgtagagtcttttccaaacagattttccactggtttgaaggctccaaggttgtgcacaaaatcttcttggcaagcagggtCTCTCACCGTACttatttgaagacaaagtctttgaggaaagcagggccctgttcgttccaagggtcaagtttcttaagactcaaatagctatgTAAATGATTGACACTTTCGCATTCaatcgacttagtcaattgtccagctgtaaaactccactgatcaggtgggcacaggcgggcagcgcagtctgtaaagttctttatttaataaagtcctttaaaagaattcttcgtacggctcaatctccttctcccagtttaactcttctgttgtcggcaaagacttggttgttttctggttccggttcgggcaacagagctacaggttgagctgtggcagcgagtttctggttcaggtgagagagagagaaagagagactgtgcgctgttctttatagtctgtcagatcaataggtgattggttcttgagtttgtgagattggatttcggtttcagcccccagtgtcctattggaggggggatTGATTTATGACtaatgtcaatccatgccatcttttggaaatgccggttggcccgggttcgtagctctgtgtctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145722 True 890 lncRNA 0.44 1 10738286 10739175

Neighbor

gene id symbol gene type direction distance location
AMCG00018432 trrap coding upstream 129158 10574896 ~ 10609128 (+)
AMCG00018429 trrap,LOC107699870 coding upstream 175324 10496873 ~ 10562962 (+)
AMCG00018426 NA coding upstream 297629 10432190 ~ 10440657 (+)
AMCG00018423 bri3 coding upstream 395862 10333521 ~ 10342424 (+)
AMCG00018425 NA coding upstream 438732 10299003 ~ 10299554 (+)
AMCG00018434 NA coding downstream 185861 10925036 ~ 10934367 (+)
AMCG00018435 LOC107699871,LOC105888715,LOC106589575,LOC106609787,LOC108274201,LOC107669229 coding downstream 219390 10958565 ~ 10975479 (+)
AMCG00018436 NA coding downstream 252982 10992157 ~ 10996021 (+)
AMCG00018433 NA coding downstream 308807 11047982 ~ 11053345 (+)
AMCG00018445 NA coding downstream 392370 11131545 ~ 11139307 (+)
G116303 NA non-coding upstream 378383 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 380929 10355972 ~ 10357357 (+)
G116301 NA non-coding upstream 386724 10350964 ~ 10351562 (+)
G116300 NA non-coding upstream 393204 10344735 ~ 10345082 (+)
G116264 NA non-coding upstream 521497 10215387 ~ 10216789 (+)
G116358 NA non-coding downstream 237847 10977022 ~ 10979685 (+)
G116374 NA non-coding downstream 322394 11061569 ~ 11083789 (+)
G116477 NA non-coding downstream 671630 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 676306 11415481 ~ 11415738 (+)
G116546 NA non-coding downstream 989634 11728809 ~ 11818089 (+)
AMCG00018422 NA other upstream 446025 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 691763 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 725613 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1125368 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 1173722 9562061 ~ 9564564 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 513184 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 1227072 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1750292 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1763848 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1804370 12543545 ~ 12611879 (+)

Expression


Co-expression Network