G116358


Basic Information

Item Value
gene id G116358
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10977022 ~ 10979685 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU145726
ACAAAGCCTTAGAAAATCAGCCTTTCAGAAGTGCAGGTTTTTAACCAGCAGAGAAAAACGTTTGCCTTTCAAAGCAGAGAACAAACAGTGGGTTCCTCCTATTAATTGGAACAGATTTGCAGTTGTTCACTAAAGGGCCCTCGCTCAATCACACAGCCTACCTAAGTGATGTTCAAAACTAGCTTACCCGTGATGCCTCTTCAGGAATTCACACCCTGAGGACTCAATTACATGTTGCCCAGAGCTCATCGGAGAACATTATTTCCAAAAGAATTTGACCctccatttttaaatcatatcttCCCATGCAGGACAGTCCATCGAATGGTCACCCGCTTCCCTCTGCCATGCTCTGAGGAGCGAGATCTGACCATTACTGCTTCCACACATATGGCAGATTTCCTCTAGGCAAATATGCACACAATGTCAGGTTGGTTATTGTTTtgcctgtctgtgtttcagCCCCTGCAATCGTTAGTGGCATTCTCAGGAAGTTATACCAAATGTCAGTCGTGTTTTGAACAGATTccatttttctctctgtgtgaaggcAAACGTTTGTCAGCCCAGTGGGATGAGGAAAGGGGCTCACTGCTAGCACCTTTTGTGTAGAGAATGCTGGGAACAACTGGGCTGCTGTGACATAATCTGGCACAATACTACCCATACAGAAAAGACTTATGAAATATACCAGTCAGTGTATTTTGTAagtatatacaataataaataaaggtcaggaaaaaatacattggactacattttgaaatagattgtgtgtgtatgtgtatataaatatatttcagcaaatactgacatacattttgtatatatgaatacatgtcAACTTGTGcctgaaatacatttagattttaaaatatacttcattatattctcaaaatgtatttcagtatatattcCCGGCcttacaaaactttttttttattttaatggtgtgAGATTGGTTTTCTTCAGTGAAGAAGACAAATTCCTGGAATGATCCATTACCCCCTAACTTCACTGTTCTCTCTCTCGTGCGTGCTCTCTCCCTCTTAACCATACGGTACACATTGTAACTTTGGGGCTGACAAGTTCAGTTTACATGACTCCAAAACAGTTGAAGTGCCCCACTCTGTTATAAGTATATTTGAGCTGAAGGAtatgtttatttgattatttggaTGTTTAATGCAGGGGGGGGCAGAACAACACTGTCTGGCACTAAGTCTTAAAATGGGATAACAGTACTGAATAGCATTGTCTCATGCAGAAGTGCTTTTAATGAAGACGTTACTTTTAACTTCTAATAACCCAACTACTAAAATACGGAGTCAAAGTGTACACTCACAGTCAGTCCTTTCTTGAAAGCTACATCCAAAATAATAGGATACTTATTTCATTCAGCTTCGAAAAATATGGAGACATCTATCAATACCCCCCTTCTATGTttacatctgtttttgtttgtttgtttgtaaactttaatcTTACAtgaccaaaaatatatataattcagttgttttttttttagcatcaGTTCTGTTCTAAAAGCTGGTAGCTTTAGATAGGTGAAATCCTACCCAACTACACTATTGACAAGGCTCTCTAAAGGCTTAAGGACTACctatttcacaaacaaaaaccctGATGCATGTTGATTTCATGGACAAGTCAAGCTGAGTAGTGGGGCATTGTTCTGCAGTAAAGGTAAAATGGGTGGGGAAACAACGGTTTTACAATTTCTGCAAAAATCAGAATATAGTATTAAAAATGTCGCTATATAAGTTTTTTGTACTAGAATACAACTGACTGCAAATATAGGACAGTGTTAGAAACTAGTTGGTGCTATATGACTGATGGATTCAAACTCACTATATGGAGAAGGTGTGATTAAAGAGGCATCTTATCCCACTGCATCAAATACTGTTGTGGGCCATCTTTTCACAAGTTACTTCTACATATACCATGTATTACGTATTACAAGGTAACAATTGGAAGATCCATGTCTTGTTCAGAcctttatgttgtgtttttatttgatttgatttttgatttattttattgaaaacaatgtgatgttatttattcaagtctaaatgagaaatgaaaataaaaagggggatttcttgatttttctctctagttctgcttttttcttcttccagatTTCAATCTTATTGATCGGAGATTTTCTATATTTGTCAGATGGTAGAGTGCAATgctaaaagtaaatatttaaataaaattgaaatacatgcatactgaaaagaaaagaagaagaaaaaaaacatgaaatatgaaagTTAACCCAGTGCCTGTGTAATGACAGAAATACTTGAATGTTTGGGTTcactacaaaattaaacaattaaaaaaaaaaaaaagctgaaaaaaagtCTTTATACCTGGATTTAAAGGAGGTTGAATGGGGGCAGATTATTTGAAACTTGTCTCCCCCAGACTGTGGTAGCAGAAAACTGCTACTggatatttccttttttcttttcctcgtCGTATTTTCATAGttcagtgtaaataaatataaatactttgacGACATAAAGAACCAATTTCTGCAGCAGTAGGCCTTTTGATTCttttttgcattgtttctgTGGAAATTTGTTTGCAACATggttaaagtgcaataaaaaaatatatggcaaA

Function

GO:

id name namespace
GO:0071310 cellular response to organic substance biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0044344 cellular response to fibroblast growth factor stimulus biological_process
GO:0010033 response to organic substance biological_process
GO:0071774 response to fibroblast growth factor biological_process
GO:0007166 cell surface receptor signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145726 True 2664 lncRNA 0.36 1 10977022 10979685

Neighbor

gene id symbol gene type direction distance location
AMCG00018435 LOC107699871,LOC105888715,LOC106589575,LOC106609787,LOC108274201,LOC107669229 coding upstream 1543 10958565 ~ 10975479 (+)
AMCG00018434 NA coding upstream 42655 10925036 ~ 10934367 (+)
AMCG00018432 trrap coding upstream 367894 10574896 ~ 10609128 (+)
AMCG00018429 trrap,LOC107699870 coding upstream 414060 10496873 ~ 10562962 (+)
AMCG00018426 NA coding upstream 536365 10432190 ~ 10440657 (+)
AMCG00018436 NA coding downstream 12472 10992157 ~ 10996021 (+)
AMCG00018433 NA coding downstream 68297 11047982 ~ 11053345 (+)
AMCG00018445 NA coding downstream 151860 11131545 ~ 11139307 (+)
AMCG00018444 gid4,LOC107724729,LOC106601817,LOC107555661 coding downstream 163578 11143263 ~ 11151189 (+)
AMCG00018443 NA coding downstream 186258 11165943 ~ 11170854 (+)
G116354 NA non-coding upstream 237847 10738286 ~ 10739175 (+)
G116303 NA non-coding upstream 617119 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 619665 10355972 ~ 10357357 (+)
G116301 NA non-coding upstream 625460 10350964 ~ 10351562 (+)
G116300 NA non-coding upstream 631940 10344735 ~ 10345082 (+)
G116374 NA non-coding downstream 81884 11061569 ~ 11083789 (+)
G116477 NA non-coding downstream 431120 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 435796 11415481 ~ 11415738 (+)
G116546 NA non-coding downstream 749124 11728809 ~ 11818089 (+)
G116601 NA non-coding downstream 1146765 12126450 ~ 12126699 (+)
AMCG00018422 NA other upstream 684761 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 930499 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 964349 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1364104 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 1412458 9562061 ~ 9564564 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 272674 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 986562 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1509782 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1523338 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1563860 12543545 ~ 12611879 (+)

Expression


Co-expression Network