G116374


Basic Information

Item Value
gene id G116374
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11061569 ~ 11083789 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU145745
cattctgTTCAGGTCCAGGGCATGGCTGCATTCTCTGAAGAAAAAGGGCAAGGAGGCAGTCTCTTTAATAAACACCTTTTAATACTATCGGCTTGTTATaaaatttggttttatttacaatCTCCAGATACATCAACAAGCGAGTCAGAAGAAGGAAGAAGAAGGGGTCAGTTCAAGAGCGatccaaaacaatgaaaaataaaattacaaaagattttcaaacagaaaatatacGTCTCCACTacagatttattattaaacCTTTCAGAGGTAAAGTGCTTTTGTTACTCCGTCGTGGTCTTAAAAACCTGGTGCTGAAATACTCCCCCCCACAGCAAAAGACACCCAAGAATGAGGAATAGGTCACCCAATGCATTTTCTAGCCACTTTATTTGATTAATACAGGTACAAAATGCAAGCATTAGAGATCCGAAATATGAAGACTAACACTTACAGTGAATTACCTGGATCTGTTTTCCATGGGCTGAAACCTGGAGGGTCTTTCAGCAAAGCGATCTTTACAAGAGGAGACATTATTGATGAACCAGTTATTGGAAATATTGCTTCTAAGAGACTGCAAAGGTGTTCATCATTTAAGGTTTTGAAAGGCcagaaaagcaaatataaataaataaataaatagataaatacaaaatgaactgtattgattgttttttaaattatatattgtataaagaTCTCAAAATCTGTCAGCCTCGCCAATGCCCATCACATAACGCACCTAAACGATTACTTTCTTTGTGGATCACCTGCTGGCATTGAATAACCGGCCAAGTGTTGATTTGAATACGGAGCATCAGCCTTGCAGTAGCAAGTGACGAATAACAGACACGTCTGCGGATCCCTGCATGCTACAGCAGATTCTGTTGTGAAGGGAAGaggcgaggggagggagggggctgCTTTGAGTTTCCCCTGACTGGACACTGAGCTGTCAGACAGCATCGTGCTCAGGCCACAGTCACCGCCCAGGGGCAGGCAGCGGGCTGGGGAGGAACAGCCTGACACACCCCGCTCCATGCCCTTGTCCTGTCACCGCactgccccccccgcccccacccctctcctctAGTACAGATTACAGTAAGATCTACAGCTGGTCTCTGCAAAAGATCTGGAACATTTCTTCAGGGAAATGGGAGACTAACGTGGCAGCCCTGGTTGTTGCCAGTTTCCAAGTCTTTTCTTTATAACAAAAGGATGAATCAATTTACTCAGGGTGTTTCAGCTAATTTTCACATCATCTCTGTGTTTatagtctttaaaaaataataattgagcaTGCAGAAACCCCTTAAGAAACACAGGACACACAAACAGCCACAtattagatttatatatatatatattttcagattaatttcttGTTATATTCAAACTCTGTGCTTCACCAGGATTGCACTGTGCTTTCTACTATGATACACCTCTAGTAAAGCTCTTGCTTTGAAAGAGACCTCCAGGTAGCCAGCCAGGATCTGTGGCATTCACTGAAATACTGCATGGTGACAGGGTGTCCCTCTCACATTCCCAGGCCTGCTCAGAAACCACTAGACTTGCTCAGCGCCAATAAAGCACAAAACCGCTCTATGTATTAGAAGAACATTGGGTTTAAATAGCGCAGGAGAAAAAAGGATGAgtctaaataaagaaaaaaaaaaaaaaaaaagactgccaCATCCAAACATTCttagaaaattataaatatttctttCGTTTtgctttcatatatatatatacacaaagaaAACGTATCAAACTATATGAAAATAACATCATAAAGGATTACTTATCTATTACAAAAtccttctatttatttttttatctttttttttttttgttaaatttaaagAGCCCAGAGTGGGTAGTGCAGATGGAGGCGAtatctgtacagtgtgtgtataaaagGAAAAGTGCCAGCCATTTTTCTCCTGAGCAGTATGTCCCTCGCAGGCACCTGTACTGCCAGAGCCACAGCCGCCTAGGGGGGGCAGCTCGGCATTGCTCAGTAGTGACAAGGGGCTCAAATGTGCTTTTTAGTTTATCTTCAAATCCAATTGAACACTGACCTTGCGACAGGCTGATTAACAGTCTCAGGACCCATCTACATTGACAATGGCGTCCGTCTGAATTAAAACGGGACAGAAATCTGATATTGTATTCTAATTCTGTCCATCCCCCTGCATCAAGCCAACTCAAACCTCAAAACTCAGAAGGGGGCTGCCCTGCTTTCAAACTGGCCAGGAGAGGTACAATAAAACTCATCCTTGCAGAACACTGGATGGACAAACAATGGGTTGTGGGAATCAAAAAACTGTTATTACAAATGCACACGAAGCCACTCTCTAGATCACAAACCTCAGTGATCTTCAAATCCACTCCTCAGCGGCCAAAGCGcgtctggttttcattccacctgagatcttaattaattcattaaattaatcattcaCTTAACTGAACAAATCGAAGCCCTTTCTTAGATCTAGGAATGATTTAAACCTCTAAAAGCCGCCAGATCACGGTCCCTGAGCAGTGGATTAGGAGAACATTGGCTGAACTACAGACCTGAAGTCGTTCAATAGAGGCTTGTTGTTTTGGTGAATATGAAGGGGAGTGAAAACAGACTTGACAGGAATACATCCCTGTACCTTTGTAAGCATTACATTCCTgacctcctcctcgtcctcctttTAAAAGGGGAGaggtgtggtgggggggcattCATGTGCCACACGGTGGCCAGACACTGTCACTGCAGCGGATATCTGacaaaagggaaagaaaaatcgGCTCGGGcctggaataaaatgaaatcgttataataataacaattaaacttGAAGCCAGAAAGCAGTCACTGTCTGAATGAGTGAAGGTAAGCAGTCTCCTTAAAGGacaggtgtttttgtttgtttgtttgtgggaaAACAAAGTATCTGATTTTGCCGGGATGCTGAGtaacagtgtgtctgtgtacatgtgtgtgatTCCATTAGCCTGTCTTGCTGGCTAGAATCGACAGAAAGGGTTTTGGCAAGACAGTGGGTTGGGGAAAGGTGCccgtcagtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145745 True 3121 lncRNA 0.42 2 11061569 11083789

Neighbor

gene id symbol gene type direction distance location
AMCG00018433 NA coding upstream 8224 11047982 ~ 11053345 (+)
AMCG00018436 NA coding upstream 65548 10992157 ~ 10996021 (+)
AMCG00018435 LOC107699871,LOC105888715,LOC106589575,LOC106609787,LOC108274201,LOC107669229 coding upstream 86090 10958565 ~ 10975479 (+)
AMCG00018434 NA coding upstream 127202 10925036 ~ 10934367 (+)
AMCG00018432 trrap coding upstream 452441 10574896 ~ 10609128 (+)
AMCG00018445 NA coding downstream 47756 11131545 ~ 11139307 (+)
AMCG00018444 gid4,LOC107724729,LOC106601817,LOC107555661 coding downstream 59474 11143263 ~ 11151189 (+)
AMCG00018443 NA coding downstream 82154 11165943 ~ 11170854 (+)
AMCG00018441 NA coding downstream 113327 11197116 ~ 11199442 (+)
AMCG00018442 rps2,rs2 coding downstream 119399 11203188 ~ 11209510 (+)
G116358 NA non-coding upstream 81884 10977022 ~ 10979685 (+)
G116354 NA non-coding upstream 322394 10738286 ~ 10739175 (+)
G116303 NA non-coding upstream 701666 10359682 ~ 10359903 (+)
G116302 NA non-coding upstream 704212 10355972 ~ 10357357 (+)
G116301 NA non-coding upstream 710007 10350964 ~ 10351562 (+)
G116477 NA non-coding downstream 327016 11410805 ~ 11412070 (+)
G116479 NA non-coding downstream 331692 11415481 ~ 11415738 (+)
G116546 NA non-coding downstream 645020 11728809 ~ 11818089 (+)
G116601 NA non-coding downstream 1042661 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 1055213 12139002 ~ 12142135 (+)
AMCG00018422 NA other upstream 769308 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1015046 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1048896 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 1448651 9606661 ~ 9612918 (+)
AMCG00018372 LOC106517353,LOC107388090,LOC103381742,LOC101078739,LOC103481046,LOC108270924,LOC108413555 other upstream 1497005 9562061 ~ 9564564 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other downstream 168570 11252359 ~ 11256165 (+)
G116585 rbbp6,LOC107689611 other downstream 882458 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 1405678 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 1419234 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 1459756 12543545 ~ 12611879 (+)

Expression


Co-expression Network