G116619


Basic Information

Item Value
gene id G116619
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12119808 ~ 12120607 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146071
CAGACCAGGTTATTGTTAGGGTTTTTATTGTGGGTTGTACCCAAGTTATACAGCTTTGTATTCTGATGCAGAGATCAGTGTAACTTTACAAACAGTAATCAGTCTACAGGTACAgtcaacaaaaaactaaatacctAAATCTACACCATTGTACATATTCACTTAAGAGCACTAAAATTGAAACGCAAgcaacagagaaaaataaaacaaaatgacagcatCAGTGGAAACATTCATCACACAATTGACAGTTTCTACCTTGTATTAGACTTATTCTTTAGTCAAAATTCATACCAATAAAAATAAGGATTGTCCTTCAAAAAGTGCAGTTCCCCAAGATAAAATTCTCAAATGATCCCAGAAAGACTGTAGAAAGGTGCTTCTGGCTCATTTCAGAACAGTTGGTAAATTAGAGACTTATTGTTTTCTATACATTGTTTAAACAGTCTACCAAAGCAATGTGCATAACAGCAGAGTTATAAGTGAGCACTtcaaacttttacatttttctctaaTCTCTTAAAGAAACAATCTATTTTTCCCCATATCATTCAGTCCACTTGGGGCATCTGTGAACTATTAAATTGCAAACAAATGCTCTTTCAGGTCTGCTACAGCTggccaattgtttatttaaattttttacacaatacattttaaatcatggcACACGTTTAATGAAGTTTCCAATCCCTCTACTACAGTAGGATTGTTTAAAGCAAACGCAAGGACACAGCAGCCTCAATAACTTCACACTGCATAGACTGTATTTTACTTCCCGCCCGTAATCGAAGTTTAAA

Function

NR:

description
protein FAM171A1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146071 True 800 lncRNA 0.35 1 12119808 12120607

Neighbor

gene id symbol gene type direction distance location
AMCG00018474 NA coding downstream 151813 11960584 ~ 11967995 (-)
AMCG00018472 NA coding downstream 161242 11945299 ~ 11958566 (-)
AMCG00018473 NA coding downstream 174919 11926937 ~ 11944889 (-)
AMCG00018466 NA coding downstream 557985 11542796 ~ 11561823 (-)
AMCG00018458 NA coding downstream 677730 11437510 ~ 11442078 (-)
AMCG00018480 NA coding upstream 2266 12122873 ~ 12135103 (-)
AMCG00018479 NA coding upstream 18166 12138773 ~ 12147324 (-)
AMCG00018486 NA coding upstream 82593 12203200 ~ 12222768 (-)
AMCG00018484 LOC103399497 coding upstream 103044 12223651 ~ 12234901 (-)
AMCG00018485 NA coding upstream 151389 12271996 ~ 12273462 (-)
G116610 NA non-coding downstream 998 12093469 ~ 12118810 (-)
G116529 NA non-coding downstream 510238 11608137 ~ 11609570 (-)
G116511 NA non-coding downstream 587738 11531798 ~ 11532070 (-)
G116501 NA non-coding downstream 605315 11511463 ~ 11514493 (-)
G116454 NA non-coding downstream 766711 11280366 ~ 11353097 (-)
G116672 NA non-coding upstream 174854 12295461 ~ 12298711 (-)
G116749 NA non-coding upstream 754308 12874915 ~ 12876763 (-)
G116750 NA non-coding upstream 759058 12879665 ~ 12884422 (-)
G116784 NA non-coding upstream 868829 12989436 ~ 13046593 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding upstream 1210284 13330891 ~ 13342748 (-)
G116577 NA other downstream 208472 11911014 ~ 11911336 (-)
G116428 NA other downstream 916920 11199578 ~ 11202888 (-)
AMCG00018440 NA other downstream 972868 11088174 ~ 11146940 (-)
AMCG00018437 srebf1,LOC107713935 other downstream 1036028 11061628 ~ 11083780 (-)
AMCG00018431 trrap other downstream 1539703 10562554 ~ 10580105 (-)
AMCG00018490 NA other upstream 166961 12287568 ~ 12290544 (-)
AMCG00018522 NA other upstream 1132478 13253085 ~ 13257250 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other upstream 1524761 13645368 ~ 13727870 (-)
AMCG00018555 LOC107689851 other upstream 2121938 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 2382796 14503403 ~ 14520875 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2335525 NA non-coding NW_023493661.1 JAAXML020000899.1 927435 ~ 928885 (+)
striped catfish (Pangasianodon hypophthalmus) G213716 tnrc6a non-coding NC_047607.1 CM018553.1 19417184 ~ 19422415 (-)