G116728


Basic Information

Item Value
gene id G116728
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12879586 ~ 12883914 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146213
CCAAACCGCTAATGAACTGTAGCCAGTGTGCAATAATTGATGTACAGGGGTTGGAtttactaaaagaaaaaaaaggcattgaGAGCAAAAAGTATCATCAGTTTCCCATGATGGTATGAGCCTACAAATCAGTCAATTTTTGTAGGGGTATTTAACTCAGGAGCAAAGGCTGAGCCGCTTAGTGAATTGGAGAGTCAATATGCAGTTCTTTGCTTGACATCATCAGTAAATCGCCCTAGATGCTTACTATAGAGTGGGAGCACTAAGGGTTTTATCCTGGACAAACAGTTTAGGACAGACGGATGTGTTACTGTACCACTATACAAAGACTTGACTTAAGGACATAGATGCCCAAgtccttttttcttctgaaaccaTAAATAAGCACAGGCAAAATGTCAACAGGGTTATCACAGCGGGCTCTATTCTCAaatcattaattttgttttacattcaattaaCCTTTGTTCTCCCATGAAGATACGACTGAATTAAACAAAGATCTGGAAAGCTTGGCACTTTACTGTTATTTACTTACAGATGGAAGACAGGAACAACTACATTGTAAACTAAGAAAATAGTTCTATATTATAGGCAGGCCTTCAAAATGAAACCTCACCCTTTGAAAAGCAGACAGACAAGCTCCAAAGAGAAATGGAGAATACAGGATAAATCAGAAGTAAGAGTTGACATGGTGACATGTAGAATCACACTTGGGGCTGAAAGAAGAGCGAACTGGGATGAAGACAAAGCCATCGAGATGCCTGTTGGATCGTATTCCCCGAGTGGAATGGAAACATTACACTATTCAAATTACCTTACATTTTGTGGGAAAGGCAAATAAGAGATTCAACCATCGTTTCGGTCTTCTCTAGATATCCCTCTTGGACATGTGAGAATAGAATCCACTGTGGTCAGTGCTTGGAGCATCTTTTGTATTATGTCAAGCCTCTGTGCGTATGGTTACTTCAGTGGAAGCAGTAACACATTGAGATGTTTCCCCTTGATACAGTCTAGATCCAATCACAAGACATTAGGAATCAGAGTTGTGTTCCCCAGACTTGAGTATGAATGGAAAATCAAAAACACTTAGTCTTATGAtcttggaaatgaaaaatgtatttccaataCAGTATGTGAACCATATACCTTCATGGTCTTTCCTTTGAAGTTGATATACAAGATGAAATAAGTCAAATTCACACCTGAAGCATATTAGTCAAGTTTGAGCTTTTTCACCCGTCATTCTTCCCTTGAAAGATTTCTCAGGTTGATTTCTTCCAGAAGAGACAACACGCTTGTCAGTACTCTCTGCCTGGCTGCTCTCGCCTGGGACTGAAATCCTGATAGAacgaacaaacacacaaacacaggaaagATTTAGGAAAGTGTCTTACAGGACTTGGTTATTACATGTCTGGAAGGACTGAGAAAGACCTTTATTTCTCCTCTTCTTTAAGCCCTAGCAACTGtatttgaaacaatacatttttataatcgGAAACTTTGGAattcaatataatattacattacagcCTTGATAATGTGCCTTTGGATTTAACTGCTGTAACATTTTTTAGGTATAGTGGCTGCTATATATCTACAAGAGGAGATCAATCAGAAACATTGTGTTCTTTCCTTTTGACAGTAGACCTAAAAATATAGAAGGGAAAAACTGTTGACTAATGAACACATATCTAAAACAGTGTGTAAAGTATCCTTATCAAATAGGAAGACTAAAGCtacttatattattaatattacaacaATGAGAAAAAGTCATGTTTCTATTCCAGCTGTTGCATGAGTACAGTATCCCTTATTCATTCGTACATAATACTACACTTGTGTTTATGATATCAGATTGCCAGACTGCATGGAAGGGAAGGgatgattttattattagtacACAGATTTATTCAGTAACCTGGTGGTTGGATTCAGGCTTTGCTCCAAAGAAAAGGCAAATTTATCtttctttcaaacaaactttAGTAAACCCAGCCCtcagcattatatatataggaagactatatatataatgtaaaataaaaaataaaaagtgtccTATAATATCCAGGTGTACTGTCTGCAATAATCTGCATAGAATTGTGGGAAACTAAGGAAGAAGGTGAAAGCTattaatattcaattaattgtatttttgcatttaaattattacttgTTATCATGtaatgatttaataattgttCTAGGTGATGTTCACTGTGCTCTTATGAAACTAGCTGAGCATTTTTTCTtaaagcaggggtgtcaaactagTTTTATAGAGATGGCTTTGTGAACTATTTCTGTGACGGACCTAGAGGCCTGTCATTTATACTATTCTACAAACCGATTTAGGATTGCATGAAGCATACAGACCCATCCATACGCATCCACATCTGTAAACATACCTATACATTTGGCCACATGTATAGTCCAATATATATTCCATAAACATAAAGAACATTCCAAATACGGTTCAAAGACTCCCCGTGAAATTGGCAGGAAGATGTTACCCTTTTCAAGATACTATAACATGTTATTGATTATACTTCAAATCAATGTCAGATACATACTGTTTTGTTGTATCCTTCCCTGGAGAGCTTTGTAACCCTTCATATACCTTCATTTGCTTTTCAATCCCcatacattttactgaaaatCATGAATTGTACACCTAATTATAACATATGGCTCTAGAATAGCACTTTTTTTGCAATACTATGCATGCTCACTTATTTCCTAACTGCAATCACAATGttcatgtgtaaataaaaaccCGGTGTACAGGAGGCTCTGTTAGCTACAACAGTAGGAAACGAtcctgtttgtttctgtgtaacTTAAAGCACTGATTGCTTTTGACAAATTACTGCTGGACTTGGAGTGGGCATCCATAATTAGGGATGCATTTGTATTGTCAGTGCATTTAGGGCTGCAATGCTGATCTGAGATCCCATTTCTTCAGCACGCCTGCTTCATTTgaacacaaaaaatgcaaatgatcaccactacagtatattacactcACCGAGTAGAATCCGCAGTATGGTTCAagatttttttgtatcagtATGTATTCATTGTGCCGCTGATAACTGTGAGATTCTCAGCTACAATCTATACACCATTGTGTTTCAGTATAAAGCTGTAGAAAAGACAACTTAAATCCTCAGTGGTGAGCCAGATCATCACAATCAGAAAATGCTATTTGGACTAAATCAAAGCCCCGTATCCAGGATATCCCCCAGGCCTGATGCCATTGAAAATTGTGAAATGGCACCAAATGTGATATTGTCTGTAGGCAACCActatgtttaaattactgtgcTGATCTGAACATTTAGGATTCTAACAATACCTGGCAATGGCATGTTAGAATGAAACAATGCACGAACGCATACAGCATGGTTTTCAATAAGGGCAAAATATGGAGTAGGTcacaaagtgatttttaaagcctGATTAATGTAATCAAGCCACTTTATGTATGTTTGAGGGTGCATAAGGTAAAAacttgatatatttaaatataaacccTTTGAAAGGATGTTATTAATTGACTTGCATGAGTTTTTAGAAATTACCAGCTTCttatttgaaaatcatgctAATTGTGGCCATGCATTCACTAACGCCAAGTAGATTCAAACAGGGGGAACTGcaaaaactatttacaaatattccatgtaaggtttttatttgggtttttcttttaattacatttcagtcttTTACAGACCAGACAGGTTATGATATGCTATGGTGATGTTGcctcctagtaatgaaacagtgATATCAGGTGTCACAGAGGCTTTATGCACTAATTAATTCTTTCAGaagggtgtgagtgtgtgagtgtgtgtgtgtgcattctgaatagtttggacctcttcaaccttccttttaaatgtcagtgtatTAAGTTCCATTGTTTGAATAATATAAGGTTAAATCAACCCTGTGAAAATTGTCTGGAGAACTTAAAGTGTAAAATGAGGGGGTGTGTAGAAACTACCAGGAATgctaatttatgtttttgtttgtttgtttggtctgAAGTTTATGGGCTGTCCTGTCTCAGTGTTCAGACCTTACTGAGCTGTTATCATGTCGGCCACACCTAGCCCTTAGACTGTCTGCTTGACACCCCTGCTTTGGAGTCACAcagtacacaataaaaaattgaaCTATTCCTgtaatttaacttttaactGTTGTTTCTGTACTGATTTTTGGTTTCTTGCTGATAACCAGGTAATACCAAACagatttttatcattattacaattattattattgcttcaaCGTGCACAGAAACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146213 True 4329 lncRNA 0.36 1 12879586 12883914

Neighbor

gene id symbol gene type direction distance location
AMCG00018502 cacna1h,LOC108430011 coding upstream 705 12836224 ~ 12878881 (+)
AMCG00018501 LOC107376712,LOC106516530,LOC103393184,LOC108242978 coding upstream 60443 12784691 ~ 12819143 (+)
AMCG00018500 NA coding upstream 141518 12714107 ~ 12738068 (+)
AMCG00018497 epn2,LOC107738009,LOC104959799 coding upstream 230706 12619360 ~ 12648880 (+)
AMCG00018492 NA coding upstream 340319 12530558 ~ 12539267 (+)
AMCG00018503 znf598 coding downstream 1273 12885187 ~ 12904501 (+)
AMCG00018507 drg2 coding downstream 50682 12934596 ~ 12943295 (+)
AMCG00018508 NA coding downstream 74798 12958712 ~ 13031788 (+)
AMCG00018506 NA coding downstream 149092 13033006 ~ 13043686 (+)
AMCG00018511 NA coding downstream 203547 13087461 ~ 13088726 (+)
G116725 NA non-coding upstream 178821 12700501 ~ 12700765 (+)
G116667 NA non-coding upstream 560098 12287569 ~ 12319488 (+)
G116654 NA non-coding upstream 600746 12278430 ~ 12278840 (+)
G116653 NA non-coding upstream 606090 12272589 ~ 12273496 (+)
G116603 NA non-coding upstream 737451 12139002 ~ 12142135 (+)
G116765 NA non-coding downstream 21186 12905100 ~ 12958552 (+)
G116769 NA non-coding downstream 49026 12932940 ~ 12934564 (+)
G116775 NA non-coding downstream 163203 13047117 ~ 13048094 (+)
G116790 NA non-coding downstream 245824 13129738 ~ 13215352 (+)
G116882 NA non-coding downstream 482726 13366640 ~ 13367028 (+)
AMCG00018498 NA other upstream 267707 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 359255 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 379532 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 908808 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1623421 11252359 ~ 11256165 (+)
G116832 NA other downstream 369429 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 423984 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 1113995 13997909 ~ 14022806 (+)
G117033 NA other downstream 1162345 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 1257463 14141377 ~ 14145995 (+)

Expression


Co-expression Network