G116750


Basic Information

Item Value
gene id G116750
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12879665 ~ 12884422 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146236
CTACCAAAAAGAAAGATACACACCACTGTAGATATGTGTATTGTTAGTTGAAATACCATGTCTCGTCCTTTCAAAATCCCAGCTAAGATTTTTTAAATGCGATGATGTCTTTACCTATCCATAACCCATAAAgaaataagtgaaaaataatgtCCTGCAAAacacttatattttattaaagtgtcCAAACATTATTCAGGTTGCAACACTTGTACAATTGGTATTTACCAACCCCCacaagttttcatttattttagttttttatattactttcaatgttttctgctattctctaaaacaaatatgtactcTGCTACACTATAAATGAGCCCTTTAAAAGGCCTATGTTACTTGCTAGTTTGGGTATATTAGGAGATGTGCTTAAATGctgaaatacattgaaatgtgtaCTGAACTCTGGACTATGTATGATTACATCACTGTACAAGGTAAAGAAGAACATTCTacactttttctcttttcatttttaattatgacaGAAGCATTGTGGTTTCTGTGCACGttgaagcaataataataattgtaataatgataaaaatctGTTTGGTATTACCTGGTTATCAGCAAGAAACCAAAAATCAGTACAGAAACAACagttaaaagttaaattacAGGAATAGttcaattttttattgtgtactgTGTGACTCCAAAGCAGGGGTGTCAAGCAGACAGTCTAAGGGCTAGGTGTGGCCGACATGATAACAGCTCAGTAAGGTCTGAACACTGAGACAGGACAGCCCATAAACTTcagaccaaacaaacaaacaaaaacataaattagcATTCCTGGTAGTTTCTACACACCCCCTCATTTTACACTTTAAGTTCTCCAGACAATTTTCACAGGGTTGATTTAACCTTATATTATTCAAACAATGGAACTTAatacactgacatttaaaaggaaggttgaagaggtccaaactattcagaatgcacacacacacactcacacactcacacccttCTGAAAGAATTAATTAGTGCATAAAGCCTCTGTGACACCTGATATcactgtttcattactaggaggCAACATCACCATAGCATATCATAACCTGTCTGGTCTGTAAaagactgaaatgtaattaaaagaaaaacccaaataaaaaccttacatggaatatttgtaaatagtttttgCAGTTCCCCCTGTTTGAATCTACTTGGCGTTAGTGAATGCATGGCCACAATTagcatgattttcaaataaGAAGCTGGTAATTTCTAAAAACTCATGCAAGTCAATTAATAACATCCTTTCAAAgggtttatatttaaatatatcaagtTTTTACCTTATGCACCCTCAAACATACATAAAGTGGCTTGATTACATTAATCaggctttaaaaatcactttgtgACCTACTCCATATTTTGCCCTTATTGAAAACCATGCTGTATGCGTTCGTGCATTGTTTCATTCTAACATGCCATTGCCAGGTATTGTTAGAATCCTAAATGTTCAGATCAgcacagtaatttaaacatagTGGTTGCCTACAGACAATATCACATTTGGTGCCATTTCACAATTTTCAATGGCATCAGGCCTGGGGGATATCCTGGATACGGGGCTTTGATTTAGTCCAAATAGCATTTTCTGATTGTGATGATCTGGCTCACCACTGAGGATTTAAGTTGTCTTTTCTACAGCTTTATACTGAAACACAATGGTGTATAGATTGTAGCTGAGAATCTCACAGTTATCAGCGGCACAATGAATACATactgatacaaaaaaatctTGAACCATACTGCGGATTCTACTCGGTgagtgtaatatactgtagtggtgatcatttgcattttttgtgttcAAATGAAGCAGGCGTGCTGAAGAAATGGGATCTCAGATCAGCATTGCAGCCCTAAATGCACTGACAATACAAATGCATCCCTAATTATGGATGCCCACTCCAAGTCCAGCAGTAATTTGTCAAAAGCAATCAGTGCTTTAAgttacacagaaacaaacaggaTCGTTTCCTACTGTTGTAGCTAACAGAGCCTCCTGTACACCGggtttttatttacacatgaaCATTGTGATTGCAGTTAGGAAATAAGTGAGCATGCATAGTATTGCAAAAAAAGTGCTATTCTAGAGCCATATGTTATAATTAGGTGTACAATTCATGattttcagtaaaatgtatgGGGATTGAAAAGCAAATGAAGGTATATGAAGGGTTACAAAGCTCTCCAGGGAAGGATACAACAAAACAGTATGTATCTGACATTGATTTGAAGTATAATCAATAACATGTTATAGTATCTTGAAAAGGGTAACATCTTCCTGCCAATTTCACGGGGAGTCTTTGAACCGTATTTGGAATGTTCTTTATGTTTATGGAATATATATTGGACTATACATGTGGCCAAATGTATAGGTATGTTTACAGATGTGGATGCGTATGGATGGGTCTGTATGCTTCATGCAATCCTAAATCGGTTTGTAGAATAGTATAAATGACAGGCCTCTAGGTCCGTCACAGAAATAGTTCACAAAGCCATCTCTATAAAActagtttgacacccctgctttaAGAAAAAATGCTCAGCTAGTTTCATAAGAGCACAGTGAACATCACCTAGaacaattattaaatcattaCATGATAAcaagtaataatttaaatgcaaaaatacaattaattgaatattaatAGCTTTCACCTTCTTCCTTAGTTTCCCACAATTCTATGCAGATTATTGCAGACAGTACACCTGGATATTATAggacactttttattttttattttacattatatatatagtcttcctatatatataatgctgaGGGCTGGGTTTACTaaagtttgtttgaaagaaaGATAAATTTGCCTTTTCTTTGGAGCAAAGCCTGAATCCAACCACCAGGTTACTGAATAAATCTGTgtactaataataaaatcatcCCTTCCCTTCCATGCAGTCTGGCAATCTGATATCATAAACACAAGTGTAGTATTATGTACGAATGAATAAGGGATACTGTACTCATGCAACAGCTGGAATAGAAACATGACTTTTTCTCATtgttgtaatattaataatataagtaGCTTTAGTCTTCCTATTTGATAAGGATACTTTACACACTGTTTTAGATATGTGTTCATTAGTCAACAGTTTTTCCCTTCTATATTTTTAGGTCTACTGTCAAAAGGAAAGAACACAATGTTTCTGATTGATCTCCTCTTGTAGATATATAGCAGCCACTATACCTAAAAAATGTTACAGCAGTTAAATCCAAAGGCACATTATCAAGgctgtaatgtaatattatattgaatTCCAAAGTTTCcgattataaaaatgtattgtttcaaataCAGTTGCTAGGGCTTAAAGAAGAGGAGAAATAAAGGTCTTTCTCAGTCCTTCCAGACATGTAATAACCAAGTCCTGTAAGACACTTTCCTAAATctttcctgtgtttgtgtgtttgttcgtTCTATCAGGATTTCAGTCCCAGGCGAGAGCAGCCAGGCAGAGAGTACTGACAAGCGTGTTGTCTCTTCTGGAAGAAATCAACCTGAGAAATCTTTCAAGGGAAGAATGACGGGTGAAAAAGCTCAAACTTGACTAATATGCTTCAGGTGTGAATTTGACTTATTTCATCTTGTATATCAACTTCAAAGGAAAGACCATGAAGGTATATGGTTCACATACTGtattggaaatacatttttcatttccaagaTCATAAGACTAAGTGTTTTTGATTTTCCATTCATACTCAAGTCTGGGGAACACAACTCTGATTCCTAATGTCTTGTGATTGGATCTAGACTGTATCAAGGGGAAACATCTCAATGTGTTACTGCTTCCACTGAAGTAACCATACGCACAGAGGCTTGACATAATACAAAAGATGCTCCAAGCACTGACCACAGTGGATTCTATTCTCACATGTCCAAGAGGGATATCTAGAGAAGACCGAAACGATGGTTGAATCTCTTATTTGCCTTTCCCACAAAATGTAAGGTAATTTGAATAGTGTAATGTTTCCATTCCACTCGGGGAATACGATCCAACAGGCATCTCGATGGCTTTGTCTTCATCCCAGTTCGCTCTTCTTTCAGCCCCAAGTGTGATTCTACATGTCACCATGTCAACTCTTACTTCTGATTTATCCTGTATTCTCCATTTCTCTTTGGAGCTTGTCTGTCTGCTTTTCAAAGGGTGAGGTTTCATTTTGAAGGCCTGCCTATAATATAGAACTATTTTCTTAGTTTACAATGTAGTTGTTCCTGTCTTCCATCTGTAAGTAAATAACAGTAAAGTGCCAAGCTTTCCAGATCTTTGTTTAATTCAGTCGTATCTTCATGGGAGAACAAAGGttaattgaatgtaaaacaaaattaatgattTGAGAATAGAGCCCGCTGTGATAACCCTGTTGACATTTTGCCTGTGCTTATTTAtggtttcagaagaaaaaaggacTTGGGCATCTATGTCCTTAAGTCAAGTCTTTGTATAGTGGTACAGTAACACATCCGTCTGTCCTAAACTGTTTGTCCAGGATAAAACCCTTAGTGCTCCCACTCTATAGTAAGCATCTAGGGCGATTTACTGATGATGTCAAGCAAAGAACTGCATATTGACTCTCCAATTCACTAAGCGGCTCAGCCTTTGCTCCTGAGTTAAATACCCCTACAAAAATTGACTGATTTGTAGGCTCATACCATCATGGGAAACTGATGATACTTTTTGCTCtca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146236 True 4758 lncRNA 0.36 1 12879665 12884422

Neighbor

gene id symbol gene type direction distance location
AMCG00018499 b9d1,LOC107737762,LOC107674617 coding downstream 224426 12648878 ~ 12655239 (-)
AMCG00018496 NA coding downstream 305153 12570888 ~ 12574512 (-)
AMCG00018495 NA coding downstream 326267 12544940 ~ 12553398 (-)
AMCG00018494 NA coding downstream 348997 12519329 ~ 12530668 (-)
AMCG00018489 LOC105030342,LOC107721515,LOC107654476 coding downstream 508141 12363296 ~ 12371524 (-)
AMCG00018505 NA coding upstream 29592 12914014 ~ 12923467 (-)
AMCG00018504 LOC107592748 coding upstream 45326 12929748 ~ 12934438 (-)
AMCG00018513 flii,LOC107703428,LOC107674686 coding upstream 254451 13138873 ~ 13159845 (-)
AMCG00018512 LOC107674657,LOC107592418,LOC107737959 coding upstream 275935 13160357 ~ 13187749 (-)
AMCG00018519 NA coding upstream 319271 13203693 ~ 13212595 (-)
G116749 NA non-coding downstream 2902 12874915 ~ 12876763 (-)
G116672 NA non-coding downstream 580954 12295461 ~ 12298711 (-)
G116619 NA non-coding downstream 759058 12119808 ~ 12120607 (-)
G116610 NA non-coding downstream 760855 12093469 ~ 12118810 (-)
G116529 NA non-coding downstream 1270095 11608137 ~ 11609570 (-)
G116784 NA non-coding upstream 105014 12989436 ~ 13046593 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding upstream 446469 13330891 ~ 13342748 (-)
G116883 NA non-coding upstream 482152 13366574 ~ 13367055 (-)
G116918 NA non-coding upstream 616296 13500718 ~ 13502497 (-)
G116931 NA non-coding upstream 644274 13528696 ~ 13534836 (-)
AMCG00018490 NA other downstream 589121 12287568 ~ 12290544 (-)
G116577 NA other downstream 968329 11911014 ~ 11911336 (-)
G116428 NA other downstream 1676777 11199578 ~ 11202888 (-)
AMCG00018440 NA other downstream 1732725 11088174 ~ 11146940 (-)
AMCG00018437 srebf1,LOC107713935 other downstream 1795885 11061628 ~ 11083780 (-)
AMCG00018522 NA other upstream 368663 13253085 ~ 13257250 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other upstream 760946 13645368 ~ 13727870 (-)
AMCG00018555 LOC107689851 other upstream 1358123 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 1618981 14503403 ~ 14520875 (-)
G117377 NA other upstream 1851716 14736138 ~ 14738312 (-)

Expression


Co-expression Network