G116765


Basic Information

Item Value
gene id G116765
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12905100 ~ 12958552 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146255
ttttcacactgcaggTCACATGGATCAAACCATGTTTTGTTGTGAATTTGGATacctcttaaaaaaacaaagtggtttcctcctttttaaaaacacattgtttttattgtcatgACCTCAACGACAGCTGcatccaaacaaataaaatttgacaaaaaactaaaccaaaacaagaaacagtGGTGCTTGCAAACAGTAACTTTTACAGAACATGGGCAATGTCTGACTCAAATCAGAACTGAGAAGGAAAAACATCAGCAAAATTAACCCATGCTGTAAAATTGGTCCAAGAAGTATTTTAACAAGAGTGCATTATCAGTACAGGAAACACAAGACCTTGAACAGTTTAATAAACAGAGTCCATTAAGATATATTGAATTACAATCAATATCACTTTGTGTACATTACCCTATCTCACAGCTTACAGATACATTAGAGATGTGCTACCACACATAGTAAACACTAAGCATTGTTGATATTCCACGCACTTCCCCAGCCCCACCCCACTCAGGGATTATCTCAAAAGTTTCAATACTTTATACAAGAGGTTCAACCCATGGAAatggacagaaaataaatccctAGTACATGTCATTGGTAcagtttgtgagtgtgtttcaaaggttaatgaaacaaaataaaagtttcgTATGACTACAAGGTATAAGGTACAATTTGCAttcatgaattttaaaaaggcatgttCTCACGAATGCAAAGACCCAgtaagtgattttatttttgtcagatcGACTAAGAAAGATGTCTTCAGTCTGTGACTTGACGTGTCTCGAAAGCAGACTGAAATCTTCTGTAGTAAAGTATTCAAAAATGATCGTATTACATCTGATTTCCAGCAAGGCAGCCAAAGATTTAAAATCTCATCAAGGGCTGGTTGCATTCAAGTGGATTACACGAGCCTAAGGAGCTAGACTTATTCTAATATTGTCAGTTACACTTGCCTCAATCCAGTTAGCCTGAAATTATGACATCATCTACCTCAGGCTAATTTAATGAGTTCTGTCTCTGGTAAATGTTACTGATCAGAATTACTGATCTGCATCGTTGGTGTCTACCTCTCGTACAACCCATTACACGTCACCGAAAAATGacttattactattattattggcCAGGACAAGAAGGGGCCTTTAACACTGAGAACCAATATTCATCAatccttttgtttctttttctcctaGAGGATGCCATGCTGTGTGTGCATCAGTAGTTTTATAGAGCAGTAGTGCCTTGCGAGAGATTCAAGGTGTTCAGTGAGCTCTAGTGGAAAATCAGAGGCTGAACCTTGCCTCATTGGTCCAGGGTTAAAGATGAGGGTTGAACCCTTGGATGTTGAATGGAAAAAAACGAATCTCAACAATACGGAGAGGTGTTCACTGTTTGAATGCTCGGTAGCGACAGGAGCTTAATTTGAAAGTATTTCAGGGAATCGTATCGCACATTGGGAGCATAAGGCAAATATTACGTTGAATAATCTCGTCTCCTAATCATTCTGCTTTGACGTTCACCAGGCGATTGTGTGGAGCTGTAAATATTCCAAATGTCATGGATTAGTGAGACTATCCCATCCGCATAGCTGTCAATCACTTGTAACCCCCCCAGGACCGATGTTGAGATTGTGTTTCTGTCCACTTTTGAGAAGATCCCATGATAGTACCACTGTAAAGAAAACTAGAAGAATAACCCCCCACAAACTGTAGTATGTATAACAATGTAGGCATAGTGTGCTTACATTCACACTGGTACATAATTTCACTTTGTAACACTACTGATTTGGACAACCTACCAAGCTCCTACCTATACACAGAAAGggatcactttttttttttttttatttttttttttt
>TU146256
ttttcacactgcaggTCACATGGATCAAACCATGTTTTGTTGTGAATTTGGATacctcttaaaaaaacaaagtggtttcctcctttttaaaaacacattgtttttattgtcatgACCTCAACGACAGCTGcatccaaacaaataaaatttgacaaaaaactaaaccaaaacaagaaacagtGGTGCTTGCAAACAGTAACTTTTACAGAACATGGGCAATGTCTGACTCAAATCAGAACTGAGAAGGAAAAACATCAGCAAAATTAACCCATGCTGTAAAATTGGTCCAAGAAGTATTTTAACAAGAGTGCATTATCAGTACAGGAAACACAAGACCTTGAACAGTTTAATAAACAGAGTCCATTAAGATATATTGAATTACAATCAATATCACTTTGTGTACATTACCCTATCTCACAGCTTACAGATACATTAGAGATGTGCTACCACACATAGTAAACACTAAGCATTGTTGATATTCCACGCACTTCCCCAGCCCCACCCCACTCAGGGATTATCTCAAAAGTTTCAATACTTTATACAAGAGGTTCAACCCATGGAAatggacagaaaataaatccctAGTACATGTCATTGGTAcagtttgtgagtgtgtttcaaaggttaatgaaacaaaataaaagtttcgTATGACTACAAGGTATAAGGTACAATTTGCAttcatgaattttaaaaaggcatgttCTCACGAATGcatatttatttatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146255 True 1867 lncRNA 0.38 2 12905100 12958552
TU146256 False 729 lncRNA 0.34 2 12905100 12919130

Neighbor

gene id symbol gene type direction distance location
AMCG00018503 znf598 coding upstream 599 12885187 ~ 12904501 (+)
AMCG00018502 cacna1h,LOC108430011 coding upstream 26219 12836224 ~ 12878881 (+)
AMCG00018501 LOC107376712,LOC106516530,LOC103393184,LOC108242978 coding upstream 85957 12784691 ~ 12819143 (+)
AMCG00018500 NA coding upstream 167032 12714107 ~ 12738068 (+)
AMCG00018497 epn2,LOC107738009,LOC104959799 coding upstream 256220 12619360 ~ 12648880 (+)
AMCG00018508 NA coding downstream 160 12958712 ~ 13031788 (+)
AMCG00018506 NA coding downstream 74454 13033006 ~ 13043686 (+)
AMCG00018511 NA coding downstream 128909 13087461 ~ 13088726 (+)
AMCG00018510 llgl1,LOC107674688,LOC107592402 coding downstream 142051 13100603 ~ 13123386 (+)
AMCG00018509 NA coding downstream 204105 13162657 ~ 13166145 (+)
G116728 NA non-coding upstream 21186 12879586 ~ 12883914 (+)
G116725 NA non-coding upstream 204335 12700501 ~ 12700765 (+)
G116667 NA non-coding upstream 585612 12287569 ~ 12319488 (+)
G116654 NA non-coding upstream 626260 12278430 ~ 12278840 (+)
G116653 NA non-coding upstream 631604 12272589 ~ 12273496 (+)
G116775 NA non-coding downstream 88565 13047117 ~ 13048094 (+)
G116790 NA non-coding downstream 171186 13129738 ~ 13215352 (+)
G116882 NA non-coding downstream 408088 13366640 ~ 13367028 (+)
G116941 NA non-coding downstream 707471 13666023 ~ 13691367 (+)
G116975 NA non-coding downstream 881164 13839716 ~ 13839971 (+)
AMCG00018498 NA other upstream 293221 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 384769 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 405046 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 934322 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1648935 11252359 ~ 11256165 (+)
G116832 NA other downstream 294791 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 349346 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 1039357 13997909 ~ 14022806 (+)
G117033 NA other downstream 1087707 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 1182825 14141377 ~ 14145995 (+)

Expression


Co-expression Network