G116775


Basic Information

Item Value
gene id G116775
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13047117 ~ 13048094 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146267
aggaaaacataatttaacatgtttaattgctttttccATGATGCAAAGTATTAACTTTACTGCCTGTGTATCCTAAAGATGCCAATAAGAAATAGAGCCCTTGTGTGAAAATTTAGTAGCTTTTTATGTGTGCGTGCAGGATTGCAGATGCTGTTAAATACTCTGTGTTGACAAATGTACAGCTCTGGCCACCTACGGACCATGTGATACAAGCATGTCAGAGGTTACAAGATGGCAGTGACGAACAATCGGTGTGTCTCTGTCCCCTTAGTCCATAGGCATGTGACTTACTTGAATCACCAGTCACAGTcaacaaagcaaagcaagacCCAGGGAAGGAATACAGATTCTAtgcagatttattattatttttatttttttctatacgCAGCTCTCAGGCATTTTAGTTGTACCGGGGAAAGCTATGTGCAACTGCTCAGTGTAAATGCATACCCACTCTGTGAATCGCATGCTGCTATAATAGTTCCATATGCTTCCCTGCTTTGGCTCTGGTCCCGGCCTATCTAGTATCAAATTCATGCAACAGCGCCTTGtgtaaacacacttttttttcttcttatattCACCCTGCCCTTGAGTTTTGGACCTGCAGAGTGAAAACAGATGGACGCTTTGCTTGCCATAGAGGCATCCTGTTAAGGCACGATAACTTATCTCGACAAGATGCTCACTTAttgcatatttgtttcattgtcaatattttaaatctcGTAATCGCATGATTGATGGAGGGTGGTGGGGTTGTGTGTGACAAATGCCTTTTACCAGTACATCATATATCTACCATTTAAGAACTATGatgtcaaatacaaaatgttgaaaacaaacttaaaacttaaaccaattaaatgtccttttctgtcattttttgcTTTACTATTAATTCCCACAAATCAGCTTAAGAGGTTCAGCCATTGACTTGATGTAATCCATTCCCCTTTAAACAATTGATATGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146267 True 978 lncRNA 0.39 1 13047117 13048094

Neighbor

gene id symbol gene type direction distance location
AMCG00018506 NA coding upstream 3431 13033006 ~ 13043686 (+)
AMCG00018508 NA coding upstream 15329 12958712 ~ 13031788 (+)
AMCG00018507 drg2 coding upstream 103822 12934596 ~ 12943295 (+)
AMCG00018503 znf598 coding upstream 142616 12885187 ~ 12904501 (+)
AMCG00018502 cacna1h,LOC108430011 coding upstream 168236 12836224 ~ 12878881 (+)
AMCG00018511 NA coding downstream 39367 13087461 ~ 13088726 (+)
AMCG00018510 llgl1,LOC107674688,LOC107592402 coding downstream 52509 13100603 ~ 13123386 (+)
AMCG00018509 NA coding downstream 114563 13162657 ~ 13166145 (+)
AMCG00018514 NA coding downstream 139829 13187923 ~ 13196197 (+)
AMCG00018516 bud31,LOC106595689 coding downstream 187107 13235201 ~ 13237686 (+)
G116765 NA non-coding upstream 88565 12905100 ~ 12958552 (+)
G116769 NA non-coding upstream 112553 12932940 ~ 12934564 (+)
G116728 NA non-coding upstream 163203 12879586 ~ 12883914 (+)
G116725 NA non-coding upstream 346352 12700501 ~ 12700765 (+)
G116667 NA non-coding upstream 727629 12287569 ~ 12319488 (+)
G116790 NA non-coding downstream 81644 13129738 ~ 13215352 (+)
G116882 NA non-coding downstream 318546 13366640 ~ 13367028 (+)
G116941 NA non-coding downstream 617929 13666023 ~ 13691367 (+)
G116975 NA non-coding downstream 791622 13839716 ~ 13839971 (+)
G116976 NA non-coding downstream 798796 13846890 ~ 13847092 (+)
AMCG00018498 NA other upstream 435238 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 526786 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 547063 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 1076339 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1790952 11252359 ~ 11256165 (+)
G116832 NA other downstream 205249 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 259804 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 949815 13997909 ~ 14022806 (+)
G117033 NA other downstream 998165 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 1093283 14141377 ~ 14145995 (+)

Expression


Co-expression Network