G116790


Basic Information

Item Value
gene id G116790
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13129738 ~ 13215352 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146286
caaaaaaaaaagcaaaaaaaaaaaaaaaaaacttaatacaATATCCTTTCAAGTCAGAATGCTTCTAGCAGatgtttaaaaccatttttCCAAATTCatgaaatgcattcataatttaaGCTTAATGTAAACTTAGAGGGGTGGAGCAAAACATGGAAAAAGACACAGAATGTTGTATATTCAGGAAATGAATTATGCCAAGAAAATCAAGGGTGATAGTAAATGTGTCTTCCACCTACTATCCTTAACTTTTACTGAAGTGTGAAGTAAAAGTTGAATTTGGCCTTTTAGAGGTTTCCTGTTCACTAAACCCACTAAAGGACAATATCTAGATTCTGCCAGACCTACAAATCTGATAGTTTACAAATCCGGCAATCCAGGCATTGGAAATCTTCCGGCAAAGGCTTCCACCTCTTCACGGATCCGTTTGATTTTCGTTTGGTATTTCTCATCTTGTGCCAGCTTGTCCTTAAACTCCTTCAGTGTGGCCTTGGGGTTCATATCCTTCTGAATCTCAACTGTCAGCAGAATGC

Function

NR:

description
PREDICTED: basic proline-rich protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146286 True 533 lncRNA 0.36 2 13129738 13215352

Neighbor

gene id symbol gene type direction distance location
AMCG00018510 llgl1,LOC107674688,LOC107592402 coding upstream 6352 13100603 ~ 13123386 (+)
AMCG00018511 NA coding upstream 41012 13087461 ~ 13088726 (+)
AMCG00018506 NA coding upstream 86052 13033006 ~ 13043686 (+)
AMCG00018508 NA coding upstream 97950 12958712 ~ 13031788 (+)
AMCG00018507 drg2 coding upstream 186443 12934596 ~ 12943295 (+)
AMCG00018516 bud31,LOC106595689 coding downstream 19849 13235201 ~ 13237686 (+)
AMCG00018515 cpsf4,LOC107578701,LOC107720053 coding downstream 31182 13246534 ~ 13252245 (+)
AMCG00018523 tnrc18,LOC107742388 coding downstream 253541 13468893 ~ 13534827 (+)
AMCG00018526 fscn1a,fscn1,LOC107742378,LOC107581720,LOC107674660 coding downstream 424371 13639723 ~ 13649092 (+)
AMCG00018527 NA coding downstream 567362 13782714 ~ 13785549 (+)
G116775 NA non-coding upstream 81644 13047117 ~ 13048094 (+)
G116765 NA non-coding upstream 171186 12905100 ~ 12958552 (+)
G116769 NA non-coding upstream 195174 12932940 ~ 12934564 (+)
G116728 NA non-coding upstream 245824 12879586 ~ 12883914 (+)
G116725 NA non-coding upstream 428973 12700501 ~ 12700765 (+)
G116882 NA non-coding downstream 151288 13366640 ~ 13367028 (+)
G116941 NA non-coding downstream 450671 13666023 ~ 13691367 (+)
G116975 NA non-coding downstream 624364 13839716 ~ 13839971 (+)
G116976 NA non-coding downstream 631538 13846890 ~ 13847092 (+)
G117130 NA non-coding downstream 1027512 14242864 ~ 14244203 (+)
AMCG00018498 NA other upstream 517859 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 609407 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 629684 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 1158960 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1873573 11252359 ~ 11256165 (+)
G116832 NA other downstream 37991 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 92546 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 782557 13997909 ~ 14022806 (+)
G117033 NA other downstream 830907 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 926025 14141377 ~ 14145995 (+)

Expression


Co-expression Network