G116832


Basic Information

Item Value
gene id G116832
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13253343 ~ 13255794 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146344
CTCAAGTATCTTACACAACACATTataggtttattttgtttcttggtcACAAACTTGACTTTgtacacaatacagaaaaaagggCATGCTGTTCTTGCCACTGTAGTCCGCATGAGAAGGCCTGGGCCCGAGCTTAGTGGTACTTCCTCCAGCGGTCGTGCTAAGATGTTCCCTGTCCCAGATGTAGCTCACAACTACATAGCCTGCCAGAAGCATAGCAATACCACCAATGCCACCCTTCTTGACATTGATGTACTTGTTATAATATCTGTCATGCCCTGCGAAGGGCAGAGAGGACTCCACTGGGAGAAAAGTCCCGGCTGCCAAGCCAGGCTGGGAACTCTCCCAGCTTCACCTCCAGAAGCCTCCTCTCAGAGATGGGCACTGCAAGGCAAAGAAACAGCTGTGAGGAGAGTACCAGacctatattaaaattatatatatatttatatataaagtctTTGTGGTGCAGAAATGCTCtttactaaaataatgtatttattttctgtgtgaattTTACAGAATCACTATGTTGACAGCAGTACACTCTCTTAAAACCAGTCTCTCAAATTGGTCTCTAATTGTTATATGAATGAGTGGCAGGCAGGTAAAGGGTTAAAGAATACAGGGGTATATAAGTtgactaaaataaaaccttccaTAAAATGATATACAGCTCAAGAGAAACCACTTGAAGAAATCTAGTACGTAAAGAAGCTTGCATTTAGGACCTGGTAAATCAGAATGTGGAAGTATGTAGGCCTAGATATGTTTGGGtatggtttattattaattagccTACTTTCTATTACAATGCAGAATTACCGAACACCTGCAAGCTAGTTGTCCAATActtgtattcaaatgtattacacaATTAGTCCTTCGATGTGGTGGGTGTACTTGAGCAGAATAACCCTGTcgtgtgtgtatattattgtactgtgattaattaatttaacaaggATACTATTAACTACGGTGTTGCACGATTAGATACCCTGCCGTTTACTTCATCAAACAAAAACTCCATTAGGATCAACCTGACCCAACAGCTGCACAATGTGTAACAATTTCAGACTATaataacatctttaaaaaagaCCCATCTGCATGTCAGGTTTGTGGTtcattactttttactttttagatATAGTCAACAATGAATGACAGTAAAGTCCTGCCCTTGACTTGACTCGGTTAGAAAAATGGATCCTGCGCGGCCTTGAACAGCACCTACGATAGACATAGCAGCCGTAAAGCAATATTAAGTATGCAAACATTTTCTAAAGTTTAAGTCcgtttaaaaatgcaatgcatatataactatttaaatacaacatCACAGCTATTTGAATGTACTGATGTTAGACACGCAACCTTACCCGGTCTATCAGCCATCTTGCTACACAGTGTGTCTTTGACGCTAAGACTTGTGGGAAACAGCTTCCTGAGGAGAGGCATTATGGGAATGAGGTCTAAACGTAGCCGAGCAGAAATGAGCGAATCGTCGGCTTCATTTGGGTAa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146344 True 1528 TUCP 0.40 3 13253343 13255794

Neighbor

gene id symbol gene type direction distance location
AMCG00018515 cpsf4,LOC107578701,LOC107720053 coding upstream 1098 13246534 ~ 13252245 (+)
AMCG00018516 bud31,LOC106595689 coding upstream 15657 13235201 ~ 13237686 (+)
AMCG00018514 NA coding upstream 57146 13187923 ~ 13196197 (+)
AMCG00018509 NA coding upstream 87198 13162657 ~ 13166145 (+)
AMCG00018510 llgl1,LOC107674688,LOC107592402 coding upstream 129957 13100603 ~ 13123386 (+)
AMCG00018523 tnrc18,LOC107742388 coding downstream 213099 13468893 ~ 13534827 (+)
AMCG00018526 fscn1a,fscn1,LOC107742378,LOC107581720,LOC107674660 coding downstream 383929 13639723 ~ 13649092 (+)
AMCG00018527 NA coding downstream 526920 13782714 ~ 13785549 (+)
AMCG00018530 LOC108430595 coding downstream 604101 13859895 ~ 13878065 (+)
AMCG00018534 arpc1a,LOC107720063,LOC107674705,LOC107591778 coding downstream 629986 13885780 ~ 13902661 (+)
G116790 NA non-coding upstream 37991 13129738 ~ 13215352 (+)
G116775 NA non-coding upstream 205249 13047117 ~ 13048094 (+)
G116765 NA non-coding upstream 294791 12905100 ~ 12958552 (+)
G116769 NA non-coding upstream 318779 12932940 ~ 12934564 (+)
G116728 NA non-coding upstream 369429 12879586 ~ 12883914 (+)
G116882 NA non-coding downstream 110846 13366640 ~ 13367028 (+)
G116941 NA non-coding downstream 410229 13666023 ~ 13691367 (+)
G116975 NA non-coding downstream 583922 13839716 ~ 13839971 (+)
G116976 NA non-coding downstream 591096 13846890 ~ 13847092 (+)
G117130 NA non-coding downstream 987070 14242864 ~ 14244203 (+)
AMCG00018498 NA other upstream 641464 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 733012 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 753289 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 1282565 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1997178 11252359 ~ 11256165 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 52104 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 742115 13997909 ~ 14022806 (+)
G117033 NA other downstream 790465 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 885583 14141377 ~ 14145995 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other downstream 933209 14189003 ~ 14191077 (+)

Expression


Co-expression Network