G116883


Basic Information

Item Value
gene id G116883
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13366574 ~ 13367055 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146413
tttcagcatgacaataacccaaaacacacagccaaggcaacaaaggagcggctcaagaagaagcacattaaggtcctggagtggcctagccagtctccagaccttaatcccatagaaaatctgtggagggagctgaaggttcgagttgccaaacgtcaacctcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagttgaaggggtcaaatacttatttccctcattaacatgcaaatcaatttataacttttttgaaatgcgtttttctgaatttttttgttgttattctgtctctcactgttaaaatccacctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146413 True 482 lncRNA 0.42 1 13366574 13367055

Neighbor

gene id symbol gene type direction distance location
AMCG00018521 NA coding downstream 120843 13238810 ~ 13245731 (-)
AMCG00018518 NA coding downstream 131890 13227151 ~ 13234684 (-)
AMCG00018517 shmt1,LOC107674655,LOC107581728,LOC107737723,LOC107720052,LOC108257064 coding downstream 142864 13214592 ~ 13223710 (-)
AMCG00018519 NA coding downstream 153979 13203693 ~ 13212595 (-)
AMCG00018512 LOC107674657,LOC107592418,LOC107737959 coding downstream 178825 13160357 ~ 13187749 (-)
AMCG00018524 NA coding upstream 205311 13572366 ~ 13578310 (-)
AMCG00018525 actb,LOC102799139,LOC103365100,LOC102299797 coding upstream 216049 13583104 ~ 13587070 (-)
AMCG00018529 NA coding upstream 376934 13743989 ~ 13745104 (-)
AMCG00018531 smurf1,LOC107720062,LOC107591759,LOC107703417,LOC107581717 coding upstream 416798 13783853 ~ 13832385 (-)
AMCG00018532 NA coding upstream 484356 13851411 ~ 13857590 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding downstream 23826 13330891 ~ 13342748 (-)
G116784 NA non-coding downstream 319981 12989436 ~ 13046593 (-)
G116750 NA non-coding downstream 482152 12879665 ~ 12884422 (-)
G116749 NA non-coding downstream 489811 12874915 ~ 12876763 (-)
G116672 NA non-coding downstream 1067863 12295461 ~ 12298711 (-)
G116918 NA non-coding upstream 133663 13500718 ~ 13502497 (-)
G116931 NA non-coding upstream 161641 13528696 ~ 13534836 (-)
G116949 NA non-coding upstream 253168 13620223 ~ 13620432 (-)
G117011 arpc1a,LOC107388895,LOC107674705,LOC107703414 non-coding upstream 519254 13886309 ~ 13887367 (-)
G117012 arpc1a,LOC102781765 non-coding upstream 520366 13887421 ~ 13890103 (-)
AMCG00018522 NA other downstream 109324 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 1076030 12287568 ~ 12290544 (-)
G116577 NA other downstream 1455238 11911014 ~ 11911336 (-)
G116428 NA other downstream 2163686 11199578 ~ 11202888 (-)
AMCG00018440 NA other downstream 2219634 11088174 ~ 11146940 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other upstream 278313 13645368 ~ 13727870 (-)
AMCG00018555 LOC107689851 other upstream 875490 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 1136348 14503403 ~ 14520875 (-)
G117377 NA other upstream 1369083 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 2131607 15498662 ~ 15518315 (-)

Expression


Co-expression Network