G116918


Basic Information

Item Value
gene id G116918
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13500718 ~ 13502497 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146454
TTTTTTTGGAAGGGTGGGGGTGTAGGGGACtaccatctttttttttctgaacgGATTGAGGTTTTGGTCTAGTAACCTTGGTCAAACGAGTCCTCCGAGGAATCACTGAAGGAAGACCTGGCCTCTGCCTCCTGCAGAAGTAAAGCAAagtgcttgtgttttttcttgagTGCCTGTTGAGATCTGAGAGTTCCTGACACCGAGCCCCTCTTGGACGATTGTCGGCTCTTCTGGGAAACTGAGCCATATAGGCTGGGACCCCTGGCTTTGGCTCCTGAAAGACCCAGAACTGACCGTGGCAGCCATCCCTCCTTCATGGATTCCTCATCCTCCGAGTCTGTATCTGTTTCAGAGGTGTATGAGTAACTGCTGACCTCCGAGCGTGCAGGTGAGTATGACTTCATCTGACCTTTCCCCTTCATCCCAGGTTCcatgttctttgttttggtcGCCATTTTGAGTTTACCTCCTTTTGATGGTTTTTGCAAGATGCCAAGGCCTTTGGAgagatttttctttccttcccgGCTTTTCATCTCCAAGTCGTGGAGCATCATGTGCATGTTGCAACTCCCAGAGCTGTTTCTTGATTTCCCTGAGGAGCCATCTACAAACTTAAAAGGGGACTTGTTGAGTTTACTGAGTTTGGTGAGAGACAAGGTCTTATCCAGTTTGGTGGCTAACTGCTCCTGCTCACTCACTCTCCTCTTTTTCTTACTCTTTATCTGCACCTGTGAGGGAACATAGTACATTTGTAAGATTGTAGAAAATCAATTTTGAGCTTAAGAATCCAAGAAAATCCATTTGGAATATATTAttcacatatattatatactttcaatacagaaaataggCCACAGATTTAAAGAATAACCTCTTGAGAGTAGCTTGAGGACGCCTCCTGGTCAATCCAgcttttgcttttccttttcattttcatgagCCTGCTTTCCAGGACTTCATCTTCTTCAGTGTTCAGCCCCCGAAAACGCTTTCTCACTCCCTCACCTGTCTCTGAGTCTTCAGACAACAGGAGGCTCCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146454 True 1044 lncRNA 0.45 2 13500718 13502497

Neighbor

gene id symbol gene type direction distance location
AMCG00018521 NA coding downstream 254987 13238810 ~ 13245731 (-)
AMCG00018518 NA coding downstream 266034 13227151 ~ 13234684 (-)
AMCG00018517 shmt1,LOC107674655,LOC107581728,LOC107737723,LOC107720052,LOC108257064 coding downstream 277008 13214592 ~ 13223710 (-)
AMCG00018519 NA coding downstream 288123 13203693 ~ 13212595 (-)
AMCG00018512 LOC107674657,LOC107592418,LOC107737959 coding downstream 312969 13160357 ~ 13187749 (-)
AMCG00018524 NA coding upstream 69869 13572366 ~ 13578310 (-)
AMCG00018525 actb,LOC102799139,LOC103365100,LOC102299797 coding upstream 80607 13583104 ~ 13587070 (-)
AMCG00018529 NA coding upstream 241492 13743989 ~ 13745104 (-)
AMCG00018531 smurf1,LOC107720062,LOC107591759,LOC107703417,LOC107581717 coding upstream 281356 13783853 ~ 13832385 (-)
AMCG00018532 NA coding upstream 348914 13851411 ~ 13857590 (-)
G116883 NA non-coding downstream 133663 13366574 ~ 13367055 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding downstream 157970 13330891 ~ 13342748 (-)
G116784 NA non-coding downstream 454125 12989436 ~ 13046593 (-)
G116750 NA non-coding downstream 616296 12879665 ~ 12884422 (-)
G116749 NA non-coding downstream 623955 12874915 ~ 12876763 (-)
G116931 NA non-coding upstream 26199 13528696 ~ 13534836 (-)
G116949 NA non-coding upstream 117726 13620223 ~ 13620432 (-)
G117011 arpc1a,LOC107388895,LOC107674705,LOC107703414 non-coding upstream 383812 13886309 ~ 13887367 (-)
G117012 arpc1a,LOC102781765 non-coding upstream 384924 13887421 ~ 13890103 (-)
G117015 arpc1b non-coding upstream 395003 13897500 ~ 13966269 (-)
AMCG00018522 NA other downstream 243468 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 1210174 12287568 ~ 12290544 (-)
G116577 NA other downstream 1589382 11911014 ~ 11911336 (-)
G116428 NA other downstream 2297830 11199578 ~ 11202888 (-)
AMCG00018440 NA other downstream 2353778 11088174 ~ 11146940 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other upstream 142871 13645368 ~ 13727870 (-)
AMCG00018555 LOC107689851 other upstream 740048 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 1000906 14503403 ~ 14520875 (-)
G117377 NA other upstream 1233641 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 1996165 15498662 ~ 15518315 (-)

Expression


Co-expression Network