G116941


Basic Information

Item Value
gene id G116941
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13666023 ~ 13691367 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146490
acaattctATTGAACAATGTATTAAAAGGCATTACTTATGGTTCCCATGTCTCAAATTACAGTTCTGTTCCACTCAAGGTTGTGTGCATATTCTACAGACTAGAGATGAGTGCATTTCATTGCTtctccaaaaaactaaaaactgaaaacctgAAGAATCttcaaaaacaacactttatttacaaaacccacgtgacattttgtaatttaacagTGGAACAGTAATGAGCCAACACACCCTGAAAAATTGTACTTAAAATCACATGCGTCTCTCAATTTAAAGTGTGCAAATGGTGTAGTTTTAAGGCAAATCCTAAAGAACGCTGCTCAGAGTCCTGTGTATGTGACATACCGGGACACTAATTTAGCACAGCAAGgaagtatatattaaatacactaaAAGTAAACAATGCTGACTTTCAACCTCATCCCTGAAGAAACTCTGATGAGAAAGGTATCGCAAAGTCTTACTGGCAGAACTCTGGATTCTGATTGGgtactgtattattaaaatgaaaaaacgaCTGTAGAACACAAACCCTAAAACTAAGAACAGTGTGACTAGTTGCTAGAGAATTTGAATTGTTAACAGTTAATATTGAGTAAGTGATTTATCATTTGTTGGTAAAAAAGGGGACTGGAGATGGACTTCCAAAGCTTCCTAAGCTGGTAGCTACTTCCTGGCAACCCAACTTTCCCTGTGTTTGAGACTGAGATGCTACTTAAACTGCCTTTACTGGGAATGTGGTGTGGTAACTCATCTttgtgaatatattattttgtcatcTTATTTTAGAACTCCAGTGAGCACCAttcattctgaaaatgttgTGGTTTTGGTaccattttttgtttccttcctttCATCCCTAATATCTGTGCTTTGGGCTGGTCAGCATTCACTGAAGGTGTATTTTGTGCTCTGTAAGAttgtaaagaaaagaaatgtagaCAATTTACTGGACTCAGCTGGGCTTTACAGGACAGACATCAGGgtgaacatttttgttgttcaaGCTCTGTGGGGAAAATAGTACAAAATAACACCACAGGGGTAAAGCACTTCTCCTTTGTTTTAAAGCAGACTTTTCTTGTAACAGTTTTGTACTTAATAAAACCTAAAACTTCAAAGGTCTGAATTCCAGCATTTAAATGGAGGTATTTAGATCCACTACTCAGAATCAAatctaaaattgtatttgcCATCTCTTCATGCCCTGCCTAAGTGtgtaaaaatttaaaatgttgagaATCAGTTGAAGATGGTTTTATTGCACTGTAACACAATGTTAGTTTCCACGTATGCTTTACAACTTATGTTAGCAGCATTATATGATTTTGACGTGCAAGCTCTTGATAAATGAAATAggttaaaaaaaggtttgttgCGGTTTACGCATGTGTTTGGGGACAGAAATATTCTACCTTCATCAACACtgtaagcaaaataataaaaggcatGAAGGAAAACTAAACCCCctgtcaaatatatatactttaggTTTAAGATAATTAAAGTGTCATTCTAAAACTTCAACTGAAAAAACTGACTGGACCATGATTGCACCTCCTGGAAGCACACTTGAtgtttcctaaaaaaaaaaaaaaaaaaaaaatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146490 True 1619 lncRNA 0.35 2 13666023 13691367

Neighbor

gene id symbol gene type direction distance location
AMCG00018526 fscn1a,fscn1,LOC107742378,LOC107581720,LOC107674660 coding upstream 16931 13639723 ~ 13649092 (+)
AMCG00018523 tnrc18,LOC107742388 coding upstream 131196 13468893 ~ 13534827 (+)
AMCG00018515 cpsf4,LOC107578701,LOC107720053 coding upstream 413778 13246534 ~ 13252245 (+)
AMCG00018516 bud31,LOC106595689 coding upstream 428337 13235201 ~ 13237686 (+)
AMCG00018514 NA coding upstream 469826 13187923 ~ 13196197 (+)
AMCG00018527 NA coding downstream 91347 13782714 ~ 13785549 (+)
AMCG00018530 LOC108430595 coding downstream 168528 13859895 ~ 13878065 (+)
AMCG00018534 arpc1a,LOC107720063,LOC107674705,LOC107591778 coding downstream 194413 13885780 ~ 13902661 (+)
AMCG00018533 mmd2,LOC107725363,LOC103909971 coding downstream 250261 13941628 ~ 13960988 (+)
AMCG00018536 NA coding downstream 281183 13972550 ~ 13985601 (+)
G116882 NA non-coding upstream 298995 13366640 ~ 13367028 (+)
G116790 NA non-coding upstream 450671 13129738 ~ 13215352 (+)
G116775 NA non-coding upstream 617929 13047117 ~ 13048094 (+)
G116765 NA non-coding upstream 707471 12905100 ~ 12958552 (+)
G116769 NA non-coding upstream 731459 12932940 ~ 12934564 (+)
G116975 NA non-coding downstream 148349 13839716 ~ 13839971 (+)
G116976 NA non-coding downstream 155523 13846890 ~ 13847092 (+)
G117130 NA non-coding downstream 551497 14242864 ~ 14244203 (+)
G117131 NA non-coding downstream 553341 14244708 ~ 14245318 (+)
G117197 NA non-coding downstream 746625 14437992 ~ 14439091 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other upstream 319146 13307898 ~ 13346877 (+)
G116832 NA other upstream 410229 13253343 ~ 13255794 (+)
AMCG00018498 NA other upstream 1054144 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 1145692 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 1165969 12489467 ~ 12500054 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 306542 13997909 ~ 14022806 (+)
G117033 NA other downstream 354892 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 450010 14141377 ~ 14145995 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other downstream 497636 14189003 ~ 14191077 (+)
AMCG00018551 NA other downstream 547875 14239242 ~ 14242717 (+)

Expression


Co-expression Network