G117011 (arpc1a,LOC107388895,LOC107674705,LOC107703414)


Basic Information

Item Value
gene id G117011
gene name arpc1a,LOC107388895,LOC107674705,LOC107703414
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13886309 ~ 13887367 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146570
AAGAAATGTAGTTTTGCGTTTTGAAGATGGAAGataataaaatgattttccAGTTGGTTACTTCTATAATCCTATAATCAGTTGCTCTTACCTGCATTTGAAGTCACAAGACCCAGCGGCCAGGAGCACATTGTTTGGATGCCAGTCTAAACTCAAGACTGTGGAACGAATGGGTTTCTTGATGTGTTTACTAACCACCAATCATTTTCAGACTCAAAGTAGCAAACTGAGATCAGACGAGCTCCACTACCCACTGCAAACTTATTCTCCAGGGGAGACCATTTGACAAACGTGGCGGCACGGTTAATCCTCAGAATGACCAAAGTTGGTTTCCAAATGCCATCTTTCTGGCTCCAAACATAGGCATTACGGTCTGAACCACAAGTCACAATACGATCACTTTTGGGGGCCCAATCAATGCCTgc

Function

symbol description
arpc1a Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton; cytoplasm; and nucleus. Predicted to be part of Arp2/3 protein complex. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human ARPC1A (actin related protein 2/3 complex subunit 1A).

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 1A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146570 True 425 lncRNA 0.43 2 13886309 13887367

Neighbor

gene id symbol gene type direction distance location
AMCG00018532 NA coding downstream 28719 13851411 ~ 13857590 (-)
AMCG00018531 smurf1,LOC107720062,LOC107591759,LOC107703417,LOC107581717 coding downstream 53924 13783853 ~ 13832385 (-)
AMCG00018529 NA coding downstream 141205 13743989 ~ 13745104 (-)
AMCG00018525 actb,LOC102799139,LOC103365100,LOC102299797 coding downstream 299239 13583104 ~ 13587070 (-)
AMCG00018524 NA coding downstream 307999 13572366 ~ 13578310 (-)
AMCG00018535 wipi2,LOC107720064 coding upstream 16252 13903619 ~ 13915955 (-)
AMCG00018546 NA coding upstream 133688 14021055 ~ 14036632 (-)
AMCG00018545 NA coding upstream 154274 14041641 ~ 14063120 (-)
AMCG00018548 foxk1,LOC107720067,LOC107703411,LOC107748300 coding upstream 202429 14089796 ~ 14090200 (-)
AMCG00018540 LOC103397138,LOC107554284,LOC100698873 coding upstream 255809 14143176 ~ 14152386 (-)
G116949 NA non-coding downstream 265877 13620223 ~ 13620432 (-)
G116931 NA non-coding downstream 351473 13528696 ~ 13534836 (-)
G116918 NA non-coding downstream 383812 13500718 ~ 13502497 (-)
G116883 NA non-coding downstream 519254 13366574 ~ 13367055 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding downstream 543561 13330891 ~ 13342748 (-)
G117012 arpc1a,LOC102781765 non-coding upstream 54 13887421 ~ 13890103 (-)
G117015 arpc1b non-coding upstream 10133 13897500 ~ 13966269 (-)
G117066 NA non-coding upstream 207924 14095291 ~ 14100107 (-)
G117122 NA non-coding upstream 345429 14232796 ~ 14233624 (-)
G117221 NA non-coding upstream 424891 14312258 ~ 14399555 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 158439 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 629059 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 1595765 12287568 ~ 12290544 (-)
G116577 NA other downstream 1974973 11911014 ~ 11911336 (-)
G116428 NA other downstream 2683421 11199578 ~ 11202888 (-)
AMCG00018555 LOC107689851 other upstream 355178 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 616036 14503403 ~ 14520875 (-)
G117377 NA other upstream 848771 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 1611295 15498662 ~ 15518315 (-)
G117784 NA other upstream 3121531 17008898 ~ 17009301 (-)

Expression


Co-expression Network