G117197


Basic Information

Item Value
gene id G117197
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14437992 ~ 14439091 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146814
tgggaGAGCTATGTAAAGAAGTCCTGTTcgtttatttatctgtttgcaTGGTTAAGGCTCGGTGTCAGTGTAACAAAAAAGCATGTCTGGCAGTATTAAAGCATTACAGGGTGCTGTTACTgtactgtctctctccagggccagggctggggacgctgctgtactggactttatctgattaaaatgtttccatcaAAGAACCACTtagttgttaaaaataaacaggatgaaaaaataacaaacattgaTATTTTAACCCagaaaacagcaacagaaaaaactacaatagtaataataataataatcatatttaatacaaattgacccataataaaatacacctcCACCCCACAACAGACAGTCAGTTATCCACAGAGCATCTAAGTGAAGCCCTGCGCGACACAGAACTGTTGCTGTGTTAGTGCCCCCTCCATTGCATGGCCAGTGTTGTGCCAGTGGTAGCGGTGTTGTTGTCTCTGTGGAGCCAGCTCCAGTTTCCAATGCATCGGCAAATACCTCGAAGACAGTGATCATGACTGGTCCTGAGCTCAGGCTGCAGCCCAGTCCAGTGTAGTATAAGCCAGTGTAGTCCAGTCAATGTAGTATAAACCAGTCCATACGTGTGGTCCTGCTGAGGGGCAGTGTGTCGACACACCACAGCAACTCCACTGTTAGTGTTTAATCACAaggagggagagcaggaggGACGGGGATGTTgtctgttattaatattgtattgtatgaatATATAACATCTATGTTGcttaaatgctttggcaacactggaTCACTCccgtcatgccaataaagctatgagtttgaatttgagagagaggaGTGCTCAAAAAACTAAATGGTTTCAGTGCACTATCACTGTGTGGCCAGCAGGGgtctctctcccctctgctCAGAGGGTCAGGGTGCTCGTCACTCTTCCCAGCCCCTTTCTCTCAATCACTCTCCCTCTCCTAGCAGCAGCCCGGCCTGTCCAGCCCCCTGTCCTGGGGTTGCTCTGTCGCTGCTCTGTCCAtt

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146814 True 1032 lncRNA 0.46 2 14437992 14439091

Neighbor

gene id symbol gene type direction distance location
AMCG00018565 sppl3 coding upstream 6366 14420275 ~ 14431626 (+)
AMCG00018569 unc119.1,unc119b,LOC107712459,LOC107753165,LOC107550938,LOC107687994 coding upstream 31014 14404406 ~ 14406978 (+)
AMCG00018570 NA coding upstream 44148 14392309 ~ 14393844 (+)
AMCG00018568 NA coding upstream 48646 14389026 ~ 14389346 (+)
AMCG00018558 NA coding upstream 70031 14361036 ~ 14367961 (+)
AMCG00018566 NA coding downstream 6129 14445220 ~ 14446081 (+)
AMCG00018580 NA coding downstream 37827 14476918 ~ 14478333 (+)
AMCG00018579 NA coding downstream 39989 14479080 ~ 14495801 (+)
AMCG00018578 LOC104951472,LOC102789619,LOC107752382,LOC102207611 coding downstream 59508 14498599 ~ 14504059 (+)
AMCG00018576 slc5a1,LOC107713298,LOC106563210,LOC105913283,LOC105014972 coding downstream 72147 14511238 ~ 14519019 (+)
G117131 NA non-coding upstream 192674 14244708 ~ 14245318 (+)
G117130 NA non-coding upstream 193789 14242864 ~ 14244203 (+)
G116976 NA non-coding upstream 590900 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 598021 13839716 ~ 13839971 (+)
G116941 NA non-coding upstream 746625 13666023 ~ 13691367 (+)
G117209 NA non-coding downstream 94872 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 297005 14736096 ~ 14738327 (+)
G117381 NA non-coding downstream 344415 14783506 ~ 14784333 (+)
G117382 NA non-coding downstream 346934 14786025 ~ 14786487 (+)
G117387 NA non-coding downstream 353705 14792796 ~ 14793804 (+)
AMCG00018567 NA other upstream 25713 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 38453 14330841 ~ 14399539 (+)
G117178 NA other upstream 90251 14345090 ~ 14347741 (+)
AMCG00018551 NA other upstream 195275 14239242 ~ 14242717 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other upstream 246915 14189003 ~ 14191077 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other downstream 335024 14774115 ~ 14777110 (+)
G117383 NA other downstream 347532 14786623 ~ 14788133 (+)
AMCG00018602 LOC102789415 other downstream 515473 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2629121 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 3542049 17981140 ~ 17983017 (+)

Expression


Co-expression Network