G117223


Basic Information

Item Value
gene id G117223
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14322085 ~ 14408949 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146864
GCGAGAGCCATGTTTCTGCCACCTCCATTTTATGGTTGGGGTTGTGCTACATGCATATTCTTATCTCAGTACCCAGCACAGCTGGATAAAGCTCTATCTGTGCCTCTCCAGCATGTTGTTTCACATGAACACACTCCCTCTCACATACACTCACTCTCAGGCAGCGGACTGCGAAAATCAAAAGGTTTCTTTATTAGTAATATCGCTCTGctgacaaaataacattttgtacaaACACCTAAAATTCACTTTGAACATGAAAAGACAAGGTTACAAAATACACGGGACCTCAATGTCTTAATTTCATTGATCATGTTTTCcagttaacatttttttttgtgttttttgttttagtaaaatTTTATACACAGATTTAAAATCTCCCCCCCAGCTCCCACTGTAAGTCGAGCTCCGGTGTGGATTCTCTCCGTCTGAGAAAAGtcaacaaaaagtaaatatagtaaaataaaaaacctcaTTCAAATAGAGGCAGGGAACAAGccttcatataataataataataataatgataatgataacaGCAACAACTCAAATGCTTCCCTGGCAGTTGAGCAGTCAAATAAACAGTAACAACAAGAGAAAACTTCCCATGTGCCACAGTTGGCCTCCAGTTCCAATAGGAGACAGTCAGTAACAAGTTatagaaaataatcaataatcgCTAGCAGACCAGTAATCCGAGTCATCAttgtcagcagcagcagcctgccACCAGAGCAAGGGGCTGCACGAGGCTGCAACTGGGGAGAATCGCAAAGTCCTGGAGTTACTCAACActggacggacggacggacggacagacagacaaacaaacgggtctgtgtgtctgagatGTGTGGAGTAGTGCAGTACATCCCATGTTgtatagtgtactgtgtgtgtgtgtgtgtgtgtgtct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146864 True 919 lncRNA 0.42 2 14322085 14408949

Neighbor

gene id symbol gene type direction distance location
AMCG00018561 grk3,LOC107689528,LOC107758628 coding downstream 5792 14293218 ~ 14316293 (-)
AMCG00018560 NA coding downstream 33090 14266095 ~ 14288995 (-)
AMCG00018554 msi1,LOC100704609 coding downstream 98768 14208436 ~ 14223317 (-)
AMCG00018556 NA coding downstream 115962 14205321 ~ 14206123 (-)
AMCG00018557 NA coding downstream 119798 14201096 ~ 14202287 (-)
AMCG00018572 NA coding upstream 1554 14410503 ~ 14417254 (-)
AMCG00018573 acads coding upstream 24997 14433946 ~ 14437780 (-)
AMCG00018574 NA coding upstream 29055 14438004 ~ 14443900 (-)
AMCG00018571 gnaz,LOC107555529,LOC107686467,LOC107744122 coding upstream 41986 14450935 ~ 14460678 (-)
AMCG00018584 NA coding upstream 121053 14530002 ~ 14539282 (-)
G117122 NA non-coding downstream 88461 14232796 ~ 14233624 (-)
G117066 NA non-coding downstream 221978 14095291 ~ 14100107 (-)
G117015 arpc1b non-coding downstream 355816 13897500 ~ 13966269 (-)
G117012 arpc1a,LOC102781765 non-coding downstream 431982 13887421 ~ 13890103 (-)
G117011 arpc1a,LOC107388895,LOC107674705,LOC107703414 non-coding downstream 434718 13886309 ~ 13887367 (-)
G117245 NA non-coding upstream 8416 14417365 ~ 14459293 (-)
G117253 NA non-coding upstream 68041 14476990 ~ 14477219 (-)
G117254 NA non-coding upstream 69146 14478095 ~ 14478937 (-)
G117293 NA non-coding upstream 169287 14578236 ~ 14588050 (-)
G117319 NA non-coding upstream 226455 14635404 ~ 14636339 (-)
AMCG00018555 LOC107689851 other downstream 58931 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 594215 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1064835 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 2031541 12287568 ~ 12290544 (-)
G116577 NA other downstream 2410749 11911014 ~ 11911336 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 94454 14503403 ~ 14520875 (-)
G117377 NA other upstream 327189 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 1089713 15498662 ~ 15518315 (-)
G117784 NA other upstream 2599949 17008898 ~ 17009301 (-)
G117823 NA other upstream 2817141 17226090 ~ 17256271 (-)

Expression


Co-expression Network