G117227


Basic Information

Item Value
gene id G117227
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14357435 ~ 14402346 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146870
GGCTTAGATAAAAtagcacatttattaaaaaggaagGGGAATCAGGTGTCAATTCAACTAACACGTCCcagctgagagagggagggggcaggtCTGTAACACATTGTTCACCTCAAAAAGAACATGTACCcctgggaggaggagggggttaATATCATCACTAGTCAATATCAATTATCAATGTGGTTCTGCCCAAATCAGGAGcaactgagggagagagactcACTGGAATGAGAAAGTCAGTGGGTGTGttattaagtgtgtgtgtgtatcagttcCTCTCTGTTGTGCAGTGGAGATTCACCCCAGTGTGATGCAGCTCAGTGGCTAgaccagagcagagcagagctaGCACAGCTGGGGGGTACAACACTGTTCCTAACACTCTCCCAGTGCAGTAGTATACTGAACACCCTCCCCTCAGCTCCACTCTTTAACAGTATTGAAGATAACAAGTGAATACAACAGTAAACTCTCTCAGaaaaacactcacacagacagacacacacagacagaacagTCATGCAATGCAGTcagaataaaaaactaaaaaacaaagatgaaataTCAAGAAGGAGAGCAGGCGGAGGCCAAGTGGTTCAGCATGTTTGCATGTATTGTAATCATGAAGGCATTGTGGattgtgtctctttctctccacacaaacagcagaaaaaaaaaaatcaaaatcaaagacacaaaacagatgTCCAAATCACCAAGCAGTGCACAATTCACACCCACAACAGGAACACAAATCAGCAGAGAGCTGCACTGCCCTGAGCCCCAAAGATCCTgagagagaacaaaataaaaagctacaaatctttatttattattagttttgattgttcttcttatttattatacattaaaaaaaaaaaaatccaagaaaCCTGTGATTCCACTCCCACTTTCATCCCTCAGTCCAGACACTCAGTGTCAGTTGGTCGGTCAGTCCCACTGTCTATCTCAGTCTGTCTAAGGAGCTGAGGCCACaatccctccctctcactccaTCAGAAAGGTTTCTATCGTCCTTGTTAAAAAACGgccaagtaaaaaaaaaaaaaaaaaaaagaaaactgggaATGCAAAATGTGATGTTTCTGGGAAATTACATAGATGTGTAAACAGTgctgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146870 True 1144 lncRNA 0.42 2 14357435 14402346

Neighbor

gene id symbol gene type direction distance location
AMCG00018563 NA coding downstream 28818 14321331 ~ 14328617 (-)
AMCG00018561 grk3,LOC107689528,LOC107758628 coding downstream 41142 14293218 ~ 14316293 (-)
AMCG00018560 NA coding downstream 68440 14266095 ~ 14288995 (-)
AMCG00018554 msi1,LOC100704609 coding downstream 134118 14208436 ~ 14223317 (-)
AMCG00018556 NA coding downstream 151312 14205321 ~ 14206123 (-)
AMCG00018572 NA coding upstream 8157 14410503 ~ 14417254 (-)
AMCG00018573 acads coding upstream 31600 14433946 ~ 14437780 (-)
AMCG00018574 NA coding upstream 35658 14438004 ~ 14443900 (-)
AMCG00018571 gnaz,LOC107555529,LOC107686467,LOC107744122 coding upstream 48589 14450935 ~ 14460678 (-)
AMCG00018584 NA coding upstream 127656 14530002 ~ 14539282 (-)
G117122 NA non-coding downstream 123811 14232796 ~ 14233624 (-)
G117066 NA non-coding downstream 257328 14095291 ~ 14100107 (-)
G117015 arpc1b non-coding downstream 391166 13897500 ~ 13966269 (-)
G117012 arpc1a,LOC102781765 non-coding downstream 467332 13887421 ~ 13890103 (-)
G117011 arpc1a,LOC107388895,LOC107674705,LOC107703414 non-coding downstream 470068 13886309 ~ 13887367 (-)
G117245 NA non-coding upstream 15019 14417365 ~ 14459293 (-)
G117253 NA non-coding upstream 74644 14476990 ~ 14477219 (-)
G117254 NA non-coding upstream 75749 14478095 ~ 14478937 (-)
G117293 NA non-coding upstream 175890 14578236 ~ 14588050 (-)
G117319 NA non-coding upstream 233058 14635404 ~ 14636339 (-)
AMCG00018555 LOC107689851 other downstream 94281 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 629565 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1100185 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 2066891 12287568 ~ 12290544 (-)
G116577 NA other downstream 2446099 11911014 ~ 11911336 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 101057 14503403 ~ 14520875 (-)
G117377 NA other upstream 333792 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 1096316 15498662 ~ 15518315 (-)
G117784 NA other upstream 2606552 17008898 ~ 17009301 (-)
G117823 NA other upstream 2823744 17226090 ~ 17256271 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G55743 NA non-coding NC_053116.1 CM020913.1 37066694 ~ 37067426 (+)
striped catfish (Pangasianodon hypophthalmus) G62849 NA non-coding NC_047598.1 CM018544.1 11685914 ~ 11688951 (-)
mexican tetra (Astyanax mexicanus) G55251 NA non-coding NC_035902.1 CM008305.1 28715239 ~ 28716001 (-)