G117254


Basic Information

Item Value
gene id G117254
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14478095 ~ 14478937 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146902
CGACAGCACACAGACTGACATATAAAAACGGGACAGACACACGCAAAGAGACTCAGAgagacacaatcacacacacacacacacacacacaaggggacagactgacacacatacaGGGTGCCTGTGTGGTGTGGCTGTGGAGCAGctgtctttctccctctctcattcaatccccctctccctcttgcaTTTTATTAGGTCTCTTCCTTGTTTGGCTCCTGATCTCAGCTCATCTGCAGTTCCACACTGGTGCAGGACCCAccatgtatattgtatattgtatttttcacttctcatataatgtgattttgtatgtgtgtgaaaagGTTGTTTATGGAATAACTGTAGTCATGGGTATTCTgccaattaataataatagtaataataatacagtaataataatagaaattaaGAAGTTTGTTTCACAGTTTGTCCTGCAGGGGGCAAGCAGTCCCCACACCTGCGCTCAAATCCAGCAAAATAGTGGACAGGTACAGCAGTGGAGGtagtgtgtttattaatttatttcattaggtcactcagtgtgtctgagagtgcaggtgtgtcagtcagtatgtGAAGATGTGAAGTCAGAGTCAGGGAGTCAGGGTGTCCAGGTAATGACCTGGATGGCGGTGAGGGCGGCTTGGCGGACGATGTCGCTGGGGTGGGAGAGGCGCTGCTGCAGCAGGGGCACGTAAGGGAGCAGTTGGGCGCGGCCGGGTGGGGCCTCTGCCAGGCATGTCAGGCAGCGCAGGGCATTACAGCTCTCCACAGCCCCTGGACACTGAGCCAGCACCAACAGGGCTGGTACTGCACCGGCCTCCAGGGCCAGGAACTTAC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106576493 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146902 True 843 lncRNA 0.50 1 14478095 14478937

Neighbor

gene id symbol gene type direction distance location
AMCG00018571 gnaz,LOC107555529,LOC107686467,LOC107744122 coding downstream 17417 14450935 ~ 14460678 (-)
AMCG00018574 NA coding downstream 34195 14438004 ~ 14443900 (-)
AMCG00018573 acads coding downstream 40315 14433946 ~ 14437780 (-)
AMCG00018572 NA coding downstream 60841 14410503 ~ 14417254 (-)
AMCG00018562 NA coding downstream 107822 14369084 ~ 14370273 (-)
AMCG00018584 NA coding upstream 51065 14530002 ~ 14539282 (-)
AMCG00018587 drg1 coding upstream 112336 14591273 ~ 14596238 (-)
AMCG00018592 NA coding upstream 168155 14647092 ~ 14648105 (-)
AMCG00018591 NA coding upstream 169206 14648143 ~ 14702246 (-)
AMCG00018589 rab35,LOC103397428 coding upstream 259457 14738394 ~ 14749164 (-)
G117253 NA non-coding downstream 876 14476990 ~ 14477219 (-)
G117245 NA non-coding downstream 18802 14417365 ~ 14459293 (-)
G117223 NA non-coding downstream 69146 14322085 ~ 14408949 (-)
G117227 NA non-coding downstream 75749 14357435 ~ 14402346 (-)
G117221 NA non-coding downstream 78540 14312258 ~ 14399555 (-)
G117293 NA non-coding upstream 99299 14578236 ~ 14588050 (-)
G117319 NA non-coding upstream 156467 14635404 ~ 14636339 (-)
G117338 NA non-coding upstream 224703 14703640 ~ 14704458 (-)
G117432 NA non-coding upstream 301350 14780287 ~ 14784313 (-)
G117438 NA non-coding upstream 354919 14833856 ~ 14835725 (-)
AMCG00018555 LOC107689851 other downstream 214941 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 750225 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1220845 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 2187551 12287568 ~ 12290544 (-)
G116577 NA other downstream 2566759 11911014 ~ 11911336 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 24466 14503403 ~ 14520875 (-)
G117377 NA other upstream 257201 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 1019725 15498662 ~ 15518315 (-)
G117784 NA other upstream 2529961 17008898 ~ 17009301 (-)
G117823 NA other upstream 2747153 17226090 ~ 17256271 (-)

Expression


Co-expression Network