G117293


Basic Information

Item Value
gene id G117293
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14578236 ~ 14588050 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146961
TGCCTTCtatatttacagatatatttatttacacacaaatacagttaATTCAGTCCCTTCAAATCAGAATCACATTTGATTGGGAAGGTATTTGACAGGGTTGCTACACCAAAACACTCGCCTCTGCACTGGACTGGGAAgcttgggggtggggtggggggcagcacagcacagagtgATGGCTTCCAAGTGGCTTGGTCtcccagccctgctcctggagggCTCCATCTGTGGCCCGTGTGCTCACCTGTTCATCTCCACTAGTTTAAGGTTCACAATTATGCCGTGACCAAGTTAAGGGTTCAATCAAGAGCTCAGTTGGAGGGAATAAAAGCCCACGGAGAGAAGGTTGTGGCTCCAGCAGAGTAGGGGTAATTCAGGCAAGTGGCTTTGGGCCTTTTCTGGGACCCGTGTAGTGGACTGTGACCCTCCCGCTGCAGGACCGGTCAAGAGAGCCAGTTGCTCGTCTTCAGCACTGATGCGCCTGATTACAGCCGTCACTCCTGTACGAGAAGAGACGCACACGCACTAGACAGGCCAAATGTATCAAGCAGTACAATAAAACCGCCATACTCCAAAGCATTTAagggagtttttgtttttttgttttttagtgagTGACTTTTATTGGACTATTTATGCTCTTTATTTAATAGCACTTTGAtagatcaaatatattttttacattttctccaaaaaaacaaaacaaataggttCTGGACCTGTTAGAACAGTGCTTTCTTTTCAAGGTGGGGGGTGCAGGGCTCGGACTGGAAAAAACAGAATGATGCTCAACAACTGCAGAACTCTGACCAAAGCAAAGaaagtgaacaaaacaaaaacaggacagctcattaaaataaaatccatcacACTGTGAAGTCCAGCCACACCTGAAGCCCAGCCATGTCTGCAGCCTAGGACCTAGGGAGCTACAGTACTCTACTCCATTCCAGCGCTTAACGACAACAAAAGTTTCTGTAACTGCCCACAATGGTGCCACTTCATGGTCACTGCTACATGTGAAGCTGCAGTGCCCATCTGGGGGACCCACCATAGTCCCCTCACAGCTCCCGGACACCCCCTTACTTCTCAATCCCGATCCCAGATCGGAATGACTTATCTGCACCAATCGTTTGGGCAATGAGATATGGCACATAGTTTGCAGGCTTTCATCAGATGCCAAATTGAGGACTGCTGCAAAACCTGCAGGGAACAGGCCTTGGTTGAGTGGAGCTACCCGGCTCCACCCCAGCACACAGCAGGGAGGTCCTCACTCAGGCCCCCCCCTCCACTGCTGCCACCCATGAGATGACCACCCGGAGAAACAAACTTGGTCACATTTGTTACCAAGaaagcagattttatttaatccccTCCCCACTCAAATCAGCTGGAAATGCTCCAGCACCTGCCTGACACAAAAGGGCTGCTCAGGAGACCTGAAGTGATCGGCCATGCATTGGGAGCTCGGTATTGATCAGTaacaaaggaaaaagaaaagtggaaaataaaagtacaagagccgccgccgccgccaccacccccccaaaaaaaaaaagatttcagtGCCAATAACTCCAATCAGTCTGGAGAGAAGAAGAGATCAGTTCTATACCAAACTGGATAAGACTGGACGAAATAGCAAGTCTCCAGTCAAGTTCGCATTCTGTATTCACAACTCCAGCTGCACTTCTTGAGACTCAATATATACAGCAGAACCCCTTTTCACATTCCCAGAAACCAACGTTTGTATGTACACTGGAGGAAAATGAAACTTAAATTTACACCCATGGGCTGTACAGTTTGGGTCTATACATTCTTCATATTTACTGCAGAAGTCAACCTGAACAAAAACCAACCCAATACCAACCCTATACCACAGCACTGGGACAGTGGCTCACCAGCACATAGCAACAACAGCATGGAGGAGGGggaaaaggggagagagagagggaaaaaaaaacaaaaaaaaacgcatCTGCCAAGAATATAGGATTCTCATTTGGTGATTACTAGTCCCCCAGTTAACAAGCTCCTTGCACATGTGTTTCTTCCCCCccctctttaaaataaaaccgggggaggaaaacaagaaaaaaaaaaaaaaaacacctgaaagATGCTCAAAGATCTGGGAAGTTCTgccatttagaaaacaatagaaataaatTCCCCGTGACCTTCCGAGTGCGCGTGGCTATGTGGTGTCCGTGCAGCGCGGGGGGTGGGGTGTGTCCACATGTCCACTCTCACTGTCTGAACTCCAGTTCGTCCACACTGATCACCTTGGCCGGCATCGAGGGGAGGGGCTGCTGCAACACATCTGAGCCGAACCACTTGGCCAGTCCGGCAGGGGGGCTGCCTCCGCGTCTCTGCGAGTGTGCCATTCTGTGCAGAGCGTTCTGGGACAGACTGCTGGGGTGGTGGGGGCCGGGGACAGAGGGGTGTAACACTGCAGAgtgaagagagaaataaattggATGCAGAGAAAACAGCAGTTGCACTGGGCAGGTGGTCCGAGGTGCGAGTTCCTAAAAAGGTGCAGGTATCTGGGCCCCCGAGTGCACTGACCAGGTGCCCTCTCCCACTCACCTGGTCTCTGCTGTAGCTGCTGCTGAATGACTGCCAGGTGCAGGGGGGTGCCTGCACCCCGGGGGGGCAGCAGGGGGTGACCTGCCGCACCCAGGGGGTAGAAGGGCTGGCCCAGGAGTGGTGGGGGCAAACCTTGCAGCTGGGAAAGGTCAACGCCTGGAGGAAACATGCCTGCAAGGAAGAGGAAGTGTTAGAGGATGGGAAGTGCAGGGCAGCTGTATGGAGGTAGATGGCCCAGACTACCCTAGTTTAGAG
>TU146962
TGCCTTCtatatttacagatatatttatttacacacaaatacagttaATTCAGTCCCTTCAAATCAGAATCACATTTGATTGGGAAGGTATTTGACAGGGTTGCTACACCAAAACACTCGCCTCTGCACTGGACTGGGAAgcttgggggtggggtggggggcagcacagcacagagtgATGGCTTCCAAGTGGCTTGGTCtcccagccctgctcctggagggCTCCATCTGTGGCCCGTGTGCTCACCTGTTCATCTCCACTAGTTTAAGGTTCACAATTATGCCGTGACCAAGTTAAGGGTTCAATCAAGAGCTCAGTTGGAGGGAATAAAAGCCCACGGAGAGAAGGTTGTGGCTCCAGCAGAGTAGGGGTAATTCAGGCAAGTGGCTTTGGGCCTTTTCTGGGACCCGTGTAGTGGACTGTGACCCTCCCGCTGCAGGACCGGTCGAGAGAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146961 True 2850 lncRNA 0.50 2 14585180 14588050
TU146962 False 457 lncRNA 0.51 2 14578236 14588050

Neighbor

gene id symbol gene type direction distance location
AMCG00018584 NA coding downstream 38954 14530002 ~ 14539282 (-)
AMCG00018571 gnaz,LOC107555529,LOC107686467,LOC107744122 coding downstream 117558 14450935 ~ 14460678 (-)
AMCG00018574 NA coding downstream 134336 14438004 ~ 14443900 (-)
AMCG00018573 acads coding downstream 140456 14433946 ~ 14437780 (-)
AMCG00018572 NA coding downstream 160982 14410503 ~ 14417254 (-)
AMCG00018587 drg1 coding upstream 3223 14591273 ~ 14596238 (-)
AMCG00018592 NA coding upstream 59042 14647092 ~ 14648105 (-)
AMCG00018591 NA coding upstream 60093 14648143 ~ 14702246 (-)
AMCG00018589 rab35,LOC103397428 coding upstream 150344 14738394 ~ 14749164 (-)
AMCG00018590 gcn1,LOC107699625,LOC107553027,LOC104958133,LOC107698162,LOC104964287 coding upstream 162229 14750279 ~ 14770330 (-)
G117254 NA non-coding downstream 99299 14478095 ~ 14478937 (-)
G117253 NA non-coding downstream 101017 14476990 ~ 14477219 (-)
G117245 NA non-coding downstream 118943 14417365 ~ 14459293 (-)
G117223 NA non-coding downstream 169287 14322085 ~ 14408949 (-)
G117319 NA non-coding upstream 47354 14635404 ~ 14636339 (-)
G117338 NA non-coding upstream 115590 14703640 ~ 14704458 (-)
G117432 NA non-coding upstream 192237 14780287 ~ 14784313 (-)
G117438 NA non-coding upstream 245806 14833856 ~ 14835725 (-)
G117441 NA non-coding upstream 268370 14856420 ~ 14857595 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 57361 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 315082 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 850366 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1320986 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 2287692 12287568 ~ 12290544 (-)
G117377 NA other upstream 148088 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 910612 15498662 ~ 15518315 (-)
G117784 NA other upstream 2420848 17008898 ~ 17009301 (-)
G117823 NA other upstream 2638040 17226090 ~ 17256271 (-)
G117899 NA other upstream 3015306 17603356 ~ 17603848 (-)

Expression


Co-expression Network