G117319


Basic Information

Item Value
gene id G117319
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14635404 ~ 14636339 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU146993
AGTTTTTCtaccatttattaaaacatacattcgTAAACccattttttaaaaatccatgattttagttaaaaacacaatgcctttgtaaaaacaccacacacaaggaacatttgtttttgtacttttaaaggAATTAGAACAACAGTCAACAATTTATCAGCATTAAGGCGTAGTGCAGTCTGAGGTTCGACAGTCACAATGACAGGGCAGCTGgacaatcctggtcctggagatccAGACTTCGCACAGGTCtcttgcattgtgttgtgttggtgaaaataataattcttataATAACTTCATCAAGAGTCACCGCCCTAATCCCAGGACCACACTGGCCCACTGAACTGAGAAAATCACTTgctaaaatcataataaaaaaggaaaaagacacATACACTGTTACACATCTTTTAAGCGGTGACTCTCAGAAGCTGCCGGACTGTGGCTCCCCAGGGCCAACATCGGGCCAGCCCCTCCCCATTGTCTGTAGTATGgcagcacagtaacacagtaCACAGAGTAATGACATCTATCTGGACAACTGCTATGCAGGTACACTCAGTATAACACACTCATAGTGCGAAACCCACCCCCCAAGGCCCCTTGAGCTCCAGAGCCCTGCAGAGATGGACAGTCGTTCGAGGCCACAGGGCAACAGACATCTTCATGAGGACCGGGTTCTGTATTGTGAcggctgtttgttttgtggcatTTGACCACACTTAGATTGTTCCTACCTTCACCTTTCACCTgtcattgttaatgtttttttttaagtttgttttgttaaacgTCATTCACCTtagaataataacattaacaacaacaataataataataacaacaaaaataataattcattatGGCCTAGCATCCCTTTTTAAAGGTCTCAGAGGGTACCAAAACTTCAGGAGCACAGGGACCACCCACCCG

Function

NR:

description
uncharacterized protein LOC101487892

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146993 True 936 lncRNA 0.42 1 14635404 14636339

Neighbor

gene id symbol gene type direction distance location
AMCG00018587 drg1 coding downstream 39166 14591273 ~ 14596238 (-)
AMCG00018584 NA coding downstream 96122 14530002 ~ 14539282 (-)
AMCG00018571 gnaz,LOC107555529,LOC107686467,LOC107744122 coding downstream 174726 14450935 ~ 14460678 (-)
AMCG00018574 NA coding downstream 191504 14438004 ~ 14443900 (-)
AMCG00018573 acads coding downstream 197624 14433946 ~ 14437780 (-)
AMCG00018592 NA coding upstream 10753 14647092 ~ 14648105 (-)
AMCG00018591 NA coding upstream 11804 14648143 ~ 14702246 (-)
AMCG00018589 rab35,LOC103397428 coding upstream 102055 14738394 ~ 14749164 (-)
AMCG00018590 gcn1,LOC107699625,LOC107553027,LOC104958133,LOC107698162,LOC104964287 coding upstream 113940 14750279 ~ 14770330 (-)
AMCG00018596 rplp0 coding upstream 137635 14773974 ~ 14778855 (-)
G117293 NA non-coding downstream 47354 14578236 ~ 14588050 (-)
G117254 NA non-coding downstream 156467 14478095 ~ 14478937 (-)
G117253 NA non-coding downstream 158185 14476990 ~ 14477219 (-)
G117245 NA non-coding downstream 176111 14417365 ~ 14459293 (-)
G117227 NA non-coding downstream 233058 14357435 ~ 14402346 (-)
G117338 NA non-coding upstream 67301 14703640 ~ 14704458 (-)
G117432 NA non-coding upstream 143948 14780287 ~ 14784313 (-)
G117438 NA non-coding upstream 197517 14833856 ~ 14835725 (-)
G117441 NA non-coding upstream 220081 14856420 ~ 14857595 (-)
G117472 NA non-coding upstream 342702 14979041 ~ 14980384 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 114529 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 372250 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 907534 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1378154 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 2344860 12287568 ~ 12290544 (-)
G117377 NA other upstream 99799 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 862323 15498662 ~ 15518315 (-)
G117784 NA other upstream 2372559 17008898 ~ 17009301 (-)
G117823 NA other upstream 2589751 17226090 ~ 17256271 (-)
G117899 NA other upstream 2967017 17603356 ~ 17603848 (-)

Expression


Co-expression Network