G117379 (rplp0,LOC107701857,LOC107654305,LOC107591459)


Basic Information

Item Value
gene id G117379
gene name rplp0,LOC107701857,LOC107654305,LOC107591459
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14774115 ~ 14777110 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147070
AGTGCAGTTGGGCAGACCAGAGTGGCAGAACTGAGGGACGCTGGGGGTGTAAATTAGGAGACGCACACAGTGACTGGGGTATTTGGGTGACTTTATTGATTGCCGTTTCTCACAGGGGTCCCTAGTCGAACAGCCCGAAGCCCATGTCGTCGTCAGACTCCTCGGACTCCTCCTTCACCTCCTCCTTGGCAGCGGGGGTGGCAGCTGCAGTTTCAGCTGCAGCCACTGGGGCGGCGACAGCAAAGGCTGTGGGGTCAGCCAGGAAAGCTTTGACCTATCAGCCAGGGGGAAGGAGTAGTCTGTCTCCATCGCGATGGCCAGGACTCTCTTGTAGCCGTTGATGATGGAGTGGGGGAGGGAGGCCACAGTGGGGTACCCGATCTCCAGGCACACACTGGCCACGTTCCTCACGCCCTGCAAGAGACCAGCACCCACAGGGTTACAGAGGCAGGCCGATCGGTCAATGAAGCAGGCAGCCCATTTCACAACACCTTTCACAGGAGAACTGCGGCGTTGAGAACCCATCTGTATGAGGAGAATACCTCAGGGTCGACACCCTCGGCCATAGATCTCACACATCCTACTCTCCTTGCCTGTCCACTTTCACACCCACAACCTCCCTCAGTCCCCCACTCTGTACCTCCAGGAAGCGCTGGTGCAGGGTGTCCTCAGTGATGTCCAGAACCTCAGGGCTGTAGACGCTGCCGTTGTCATACACCTGCTGGATGATCAGGCCGAAGGAGAAGGGCGAGATGTTCAGCATATTGAGCAGCGTGGCCTCGCTGGCGCCCACCTTGTCTCCAGTCTTGATCAGCTGCACGTCGCTCTGAGGGACGAGAGAGGGGGGTTAAAGGTGGCTACAGAAGCTAGAGAGAGTGGGGTTACCAGGCATCCAGAGACATTTGACACTGAGACTATTCCTCTGGAAGAGTGTGCGAGACCAGCG
>TU147072
AGTGCAGTTGGGCAGACCAGAGTGGCAGAACTGAGGGACGCTGGGGGTGTAAATTAGGAGACGCACACAGTGACTGGGGTATTTGGGTGACTTTATTGATTGCCGTTTCTCACAGGGGTCCCTAGTCGAACAGCCCGAAGCCCATGTCGTCGTCAGACTCCTCGGACTCCTCCTTCACCTCCTCCTTGGCAGCGGGGGTGGCAGCTGCAGTTTCAGCTGCAGCCACTGGGGCGGCGACAGCAAAGGCTGTGGGGTCAGCCAGGAAAGCTTTGACCTGGGGGGGACAGAGAGGTCAGTACACTGCATAGCACCAAGGTGCCAATTTGCTGGAGAGACAGTACAGTAGGGTCTGCAGCCCTGGACCCGAGAGCTACAGTACATTTATAGAGTTCAGTCTGAGCCTCAGTGTTCGGGGCTGTGGAGACTGTTCAGGGGTACGCTGGGGCGTCTCACCTTATCAGCCAGGGGGAAGGAGTAGTCTGTCTCCATCGCGATGGCCAGGACTCTCTTGTAGCCGTTGATGATGGAGTGGGGGAGGGAGGCCACAGTGGGGTACCCGATCTCCAGGCACACACTGGCCACGTTCCTCACGCCCTGCAAGAGACCTCCAGGAAGCGCTGGTGCAGGGTGTCCTCAGTGATGTCCAGAACCTCAGGGCTGTAGACGCTGCCGTTGTCATACACCTGCTGGATGATCAGGCCGAAGGAGAAGGGCGAGATGTTCAGCATATTGAGCAGCGTGGCCTCGCTGGCGCCCACCTTGTCTCCAGTCTTGATCAGCTGCACGTCGCTCTGAGGGACGAGAGAGGGGGGTTAAAGGTGGCTACAGAAGCTAGAGAGAGTGGGGTTACCAGGCATCCAGAGACATTTGACACTGAGACTATTCCTCTGGAAGAGTGTGCGAGACCAGCG
>TU147073
AGTGCAGTTGGGCAGACCAGAGTGGCAGAACTGAGGGACGCTGGGGGTGTAAATTAGGAGACGCACACAGTGACTGGGGTATTTGGGTGACTTTATTGATTGCCGTTTCTCACAGGGGTCCCTAGTCGAACAGCCCGAAGCCCATGTCGTCGTCAGACTCCTCGGACTCCTCCTTCACCTCCTCCTTGGCAGCGGGGGTGGCAGCTGCAGTTTCAGCTGCAGCCACTGGGGCGGCGACAGCAAAGGCTGTGGGGTCAGCCAGGAAAGCTTTGACCTGGGGGGGACAGAGAGGTCAGTACACTGCATAGCACCAAGGTGCCAATTTGCTGGAGAGACAGTACAGTAGGGTCTGCAGCCCTGGACCCGAGAGCTACAGTACATTTATAGAGTTCAGTCTGAGCCTCAGTGTTCGGGGCTGTGGAGACTGTTCAGGGGTACGCTGGGGCGTCTCACCTTATCAGCCAGGGGGAAGGAGTAGTCTGTCTCCATCGCGATGGCCAGGACTCTCTTGTAGCCGTTGATGATGGAGTGGGGGAGGGAGGCCACAGTGGGGTACCCGATCTCCAGGCACACACTGGCCACGTTCCTCACGCCCTCAGGAAGCGCTGGTGCAGGGTGTCCTCAGTGATGTCCAGAACCTCAGGGCTGTAGACGCTGCCGTTGTCATACACCTGCTGGATGATCAGGCCGAAGGAGAAGGGCGAGATGTTCAGCATATTGAGCAGCGTGGCCTCGCTGGCGCCCACCTTGTCTCCAGTCTTGATCAGCTGCACGTCGCTCTGAGGGACGAGAGAGGGGGGTTAAAGGTGGCTACAGAAGCTAGAGAGAGTGGGGTTACCAGGCATCCAGAGACATTTGACACTGAGACTATTCCTCTGGAAGAGTGTGCGAGACCAGCG
>TU147075
TGTCAATATTGCTAATGTGACTCGTGCTAATAAGATATCAGAAGTGAACAGAATATTCCATTCTCCCAGAATGCCTCACCAGGATTTCAATGGTACCCCTGGAGATCTTGGTGGTGATACCAAGGGCCTGGAAGAAGGAGGTTTTCTCGGGGCCCAGCCCAGTGTTCTGCGCCGGCACAGTCACCTCACAGGGAGCGATGGCACCTGCACGCGCCGCTGCTGGCACCTGTTGGCCAGCAGCATGTCCCTGATCTCGGTCAGATCCTCCTTGGTGAACACGAAGCCCACGTTCCCACGGATGTGTGGCAGCAGCCTGGGGCAAAGGGAGGGGAAATTAGGG
>TU147077
AGTGCAGTTGGGCAGACCAGAGTGGCAGAACTGAGGGACGCTGGGGGTGTAAATTAGGAGACGCACACAGTGACTGGGGTATTTGGGTGACTTTATTGATTGCCGTTTCTCACAGGGGTCCCTAGTCGAACAGCCCGAAGCCCATGTCGTCGTCAGACTCCTCGGACTCCTCCTTCACCTCCTCCTTGGCAGCGGGGGTGGCAGCTGCAGTTTCAGCTGCAGCCACTGGGGCGGCGACAGCAAAGGCTGTGGGGTCAGCCAGGAAAGCTTTGACTTATCAGCCAGGGGGAAGGAGTAGTCTGTCTCCATCGCGATGGCCAGGACTCTCTTGTAGCCGTTGATGATGGAGTGGGGGAGGGAGGCCACAGTGGGGTACCCGATCTCCAGGCACACACTGGCCACGTTCCTCACGCCCTAGGAAGCGCTGGTGCAGGGTGTCCTCAGTGATGTCCAGAACCTCAGGGCTGTAGACGCTGCCGTTGTCATACACCTGCTGGATGATCAGGCCGAAGGAGAAGGGCGAGATGTTCAGCATATTGAGCAGCGTGGCCTCGCTGGCGCCCACCTTGTCTCCAGTCTTGATCAGCTGCACGTCGCTAGGATTTCAATGGTACCCCTGGAGATCTTGGTGGTGATACCAAGGGCCTGGAAGAAGGAGGTTTTCTCGGGGCCCAGCCCAGTGTTCTGCGCCGGCACAGTCACCTCACAGGGAGCGATGGCACCTGCACGCGCCGCTGCTGGCACCTGGAGGGTGtttgggagagagagtggggttACCAGGCATCCAGAGACAAGTTATTCTTCAGCAAAAGACATTTGACATTCAGACTATTCCTTTGGAAGTGTGCGAGACCAGCGTCCCTGCCGCCCGTGGAGAGCAAGAGTGACAGGGATAGTAGGAAACGAGTGGCTCTGCGCAGGGGGAACGCCAGGACAGCACCGCACGGCTGCACTGGAACTTAACCTGCGCCCATTGTCGTTAAAAGTTTCACCCCACGCAAACTGCACACTTAGCCTGGCATCAGCGCCAgtttcagatttccttagcATTACAGGCTTTTAAATACTCCCAAGAGAGGGAGAACTTGGAGCTTAACCTGCACACTCACCTTGTTGGCCAGCAGCATGTCCCTGATCTCGGTCAGATCCTCCTTGGTGTCCACGGATGGCTTTGCGCATCATGGTGTTCTTGCCCATCAGCACCACGGCCTTTCCCCGCAGGGACAGACGGATCGTCTGCATCTGCTTGGATCCCACATTGTCCGCACCCACAATGAAGCACTTTGGGTAGTCATCCAGCAGTTGCTATAGAGGGGGGGGTAGACTATAAACATCTATGTTTTCATGCCACCAACATCatgtacaatttaaattgcATCTACGAGTTTAATTGATGGTATAGACTACACATTGCATCACCCTAG

Function

symbol description
rplp0 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in cytoplasm; nucleus; and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in several structures, including brain; digestive system; eye; otic vesicle; and ovary. Orthologous to several human genes including RPLP0 (ribosomal protein lateral stalk subunit P0).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147070 False 946 lncRNA 0.58 2 14774115 14775240
TU147072 False 911 lncRNA 0.58 2 14774115 14775240
TU147073 False 899 lncRNA 0.58 2 14774115 14775240
TU147075 False 340 TUCP 0.56 2 14775789 14776494
TU147077 True 1424 lncRNA 0.56 5 14774115 14777110

Neighbor

gene id symbol gene type direction distance location
AMCG00018588 bicdl1 coding upstream 42451 14707571 ~ 14731664 (+)
AMCG00018586 LOC107677981,LOC107567443 coding upstream 127283 14630062 ~ 14646832 (+)
AMCG00018585 NA coding upstream 159670 14599262 ~ 14614445 (+)
AMCG00018577 NA coding upstream 186087 14574260 ~ 14588028 (+)
AMCG00018581 NA coding upstream 216315 14554089 ~ 14557800 (+)
AMCG00018593 NA coding downstream 44881 14821991 ~ 14824758 (+)
AMCG00018600 NA coding downstream 54390 14831500 ~ 14834064 (+)
AMCG00018608 cldn5,LOC103357131 coding downstream 150052 14927162 ~ 14927524 (+)
AMCG00018603 ufd1l coding downstream 172526 14949636 ~ 14954263 (+)
AMCG00018611 ppil2 coding downstream 653174 15430284 ~ 15468382 (+)
G117353 NA non-coding upstream 35788 14736096 ~ 14738327 (+)
G117209 NA non-coding upstream 239915 14533963 ~ 14534200 (+)
G117197 NA non-coding upstream 335024 14437992 ~ 14439091 (+)
G117131 NA non-coding upstream 528797 14244708 ~ 14245318 (+)
G117130 NA non-coding upstream 529912 14242864 ~ 14244203 (+)
G117381 NA non-coding downstream 6396 14783506 ~ 14784333 (+)
G117382 NA non-coding downstream 8915 14786025 ~ 14786487 (+)
G117387 NA non-coding downstream 15686 14792796 ~ 14793804 (+)
G117388 NA non-coding downstream 16775 14793885 ~ 14794239 (+)
G117389 NA non-coding downstream 19421 14796531 ~ 14797150 (+)
AMCG00018567 NA other upstream 361836 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 374576 14330841 ~ 14399539 (+)
G117178 NA other upstream 426374 14345090 ~ 14347741 (+)
AMCG00018551 NA other upstream 531398 14239242 ~ 14242717 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other upstream 583038 14189003 ~ 14191077 (+)
G117383 NA other downstream 9513 14786623 ~ 14788133 (+)
AMCG00018602 LOC102789415 other downstream 177454 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2291102 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 3204030 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 3942096 18719206 ~ 18721343 (+)

Expression


Co-expression Network