G117432


Basic Information

Item Value
gene id G117432
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14780287 ~ 14784313 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147142
gggaggagagcCACTAGAAGACCAGGCCATTCACTACAAACGCCAATCCACACAACTCCAGCACACAACCAACGACACCTcctaccccccctccccagcctGATACTGATCCCGCCTCTGCAGCCTGTCTGTCTCCGTCTGTCTAAGGTGAAGGGAGGAGCTGTCCGTCTCTGCATGCAGTCTACATTCAATGCCACACACTCGGAGACATGCACTCAccgacacacacccacacatattCAGAGAGATGcacacccacatacacacaccgaCTCACACCAGCACAAGAGAGAGACGCACgaatacatacacactcagaCACTTGGTGTCTCTATTTTTTTAtagtgagatttatttttacaacacaGACCAGAGCTCAAATTTCTGTCAGCCAAGtggtgtctgtctctctctctctgtctctatctctgttTGTCTCTCACACGAAAATCAAAGGTGCATTTTTACAGCTTGGTAAAGTATATATCGGGacaatatttttgtaaactttttctatagatttttttttttcttaaattaaaaatacaaaacctaaAATCACatctacaaatacatatatagatagattgatagataaaTATACAGATAGAGGTTTGgatccaaatatatatacaaatataaagatCTGTAGGAGTGGCTGACCAGTGTTTTTGGAAAAGTTCTGACCACAAGCCAGAGGCTGTGCTTGTCAAGACATTTTTAATCCAACATATCTAAATATCTCATTCTGTGctacccccccctcctcccccagaGAGAGAGTTCTCAAACCCCATACAGTTGcagcctatatatatttatgttgagTTTGATTTTCGTTTTAGTTTAAAGTTTATCTTTAGGGTTGTGGGCAtcatttggttttgttgtgGGGGGTGATTTGTCTTTTTCAATATCACAAATGGGGCAGGGCTTATATCTGGATTGACAGCCCTGACCACCTACTTGACCTGATATCACTAGCAATAATAGTGTAaggtgaatttttttttttttttttttaattatttttattttaaagtaattttatcTTTGGAATAAAAATATCAATTCTGGTCTCTTTCAccatctctttctcttcctctgttttgctctctctccctctttattatattattaattactgtTAAGCATCTATTTCATACAAGAACTCCCTAAGTGTGGGCATGTTTCTTTAAcctctggtgtttttttttttttacatagaaCGTACAGCTGGGGAATGTGTAACACACATGCAGGGTCCTGCCGTTTTAAAATGAGCAGTCCAGTCGCTAGAAGCACCATGTGTATGCTTTgccaacaccaagcacaaaattAAGTAGGCATTAACAGCTCAGCATTTGGAAAAACCTCAGGCCTGTGCATCATGTGGGGCTGGACACAGACGCTCAGAGATAAACATTTTTTGGAGGATTTGTTATTTGGGAAGGGTCAGGAGGGGCTTAGGGTAAGCGATGCTCATTGTAATATTTCggcgctctgtgtgtgtgtgtgtgtcggagaTTTTAATCGGagaaccactttttttttttctactgtgCTGTCTAACAAgctgtttttaacatttaaagaatCAGTCCTATCGTCCGCTGTGATGTAATATGGAAGACTGGTCTCTTAACCTTCTGAAGGGATGGTCGTCGTGGAGACGCCTGTGACATCACTGTATGACACTGAGGGCACTACTCTGTCCAGGCGTCTCCTAGGTAACTGACAGGAGGCTGGGGAGATTCTAgaactgctgtttttgtttttgttttttaactctATACAAAATATTTCTGGCTTTGCCTGTCTGTAAAGATTTTGTTGCCATTGCTTATAAAAATGGCCATTTGATTCATTGTGGATAATTGTATCTTTATAACGCAAGTCTTAAGAATTGAGTTgatgatttgcttttttttcctttttatttagtttcacttttttttttttaagtgggaATTCATGGAAAGGGCTTTATGTGATGTGATGCAGTGTGAGTTATGGGGGGGGGCAAGATTTCCTGTAGAAATTAGgattcatttaaacacaaagaTTGGGAGTGAGACTAGGTATTACACTCTCTGCTGCCACTCTGCCAGGCAGGTCTGGGAGGGAGCCTCAGCCAGTTAACTGGTTCCCTCCCTGAAATCACGGTCGGTCTCCAGCACACTGGAGCCCTTGTGCTTGATCTCCAAGAGGAGGAGTGAAAACGGAACCGCATTTCCACAAGATATtggactgttttttgttttttgttttttagctcAGAAAGGTTTTGACACCATCAGGTCAAagttatatttaacaattttatttcagccaagtttggctttttttttttggttttggcaCTTGCGATAAATACAGTGTTTCATACAATGGACTATGAAAGTCAAGTGTTACATTTTCATACCCATCTCACTGGAAGCTCAAACCAAGACTAGTTGGAAACAGATTTTCACCCAGATGATGCAGATAGGGTTAATTATTTTGGacaaataataaactttatgTAACTAAAACTGCAACTCAGCCTTTTCAATACAGGAAATGTTACATGCTGTAAATAAAGctgttatagtttttttttgttttcctttacttttaaaaatctaaTCAGTGCTTGTGCCAAAATATATCAATGCAAAAATAAGTCTTTAACACTGTTGAGCAGTTCAGTTTGCTGGTCAGGCTGCGTCTGCCTGCTGCAAGCGGATTGGTCAGGCTATTGTGATGTCATTGGAACATGGTGTAAGCCCCTCCCCCCTCCATTTGGTTAATTTCAGGTTCTGCTGGAAGAGCAGTGTATATCAGGGGATGGGATTGGTTGGCTCCTGTTCCAAAGAGGGTGGAGTCTGTGGAAAGGGGGAGGAGCTGCCctgttccatttttttattttattttttccttcttttttgtgttgtgtttttctgtcccATATGAGCCCTCGGGTTACAGTTACTGTTGTCTGGCTCATCCCAGCTGTGCACCTCAATGACGAGTCATTTCTGACCATTAATTGTGCTTTTCTAGTGCCAAATCACCAATTAGATGTATTTATCACATACATGGAACTAAATTCTATTCATAGAGGTGAGTGAGTGGACTGTATTTGATGGGGGGTTGGGGCAGGGAATGCAAGAAACTCACTGTAAATGGGACAGGATTTTGCTCACTCTCTTTGGCTCTGGAGGAGGTTagaatttatttcaaatgtgtatCTACATGTATaactatacacacaatatatgaCCCTCATTGTAGCACCCAGTCTGTGGGCAGTGACACTGGCAGTCAGTTATGCTGGGTGGGTGTAATCCAATTTCCTGTTCTGAGGCCTTACTCTTCTCCAGGGTTGGGGCTTCAGAGCACAGTCTCTGCAGGCCCATGTTTGTCAACCCTGTCTGCAAGTTCTTGGGGTCCCTCTGTTTCCCAGTCCTCTGCCCTGAGcccttaattggttaattaaacCTGTTATCCACTTCACCACTGTAGCCCTTTCCCCTTCCCGTGTCTGATGCAGGTGATGCTTTAAAGAGACCTATAGATAAATCGATctatacatgtatttcaaaacCTGTTGGACTGTGAACATCACGGGCTGGATTGGAAGAACACTCGTGTAGGGCTTTTTGTTTGGCACCTTTGTCTCGGTTATTGTTGACCCTACTGTACTGGACTGGTGGAGGTGCTATCAAAGCTTTACGGTGTAACCAGCGTTTACATCGCGTCACATCAAATTAATCTCCTTGTTTTACCAAAGGGAACCATTATAAAACAGACTAGAcagtttcatttgattttcatcatgttttggttcatttttcTCTGAAAGTGAAGTTCATTGTTAATCCATTTGACTGTGTTCTGGTTCTTTTCTCATCTCCTGCAGATGATGTAATGgctttctttgtattatttagttttttgttaattgtttgtCTGTGAAGCTGATTGCCGATGCTTTTAAGTTTATGTGATTAtgccaataataaaaaaaaaaaacaatgttact

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0001822 kidney development biological_process
GO:0072001 renal system development biological_process
GO:0001655 urogenital system development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147142 True 4027 lncRNA 0.40 1 14780287 14784313

Neighbor

gene id symbol gene type direction distance location
AMCG00018596 rplp0 coding downstream 1432 14773974 ~ 14778855 (-)
AMCG00018590 gcn1,LOC107699625,LOC107553027,LOC104958133,LOC107698162,LOC104964287 coding downstream 9957 14750279 ~ 14770330 (-)
AMCG00018589 rab35,LOC103397428 coding downstream 31123 14738394 ~ 14749164 (-)
AMCG00018591 NA coding downstream 78041 14648143 ~ 14702246 (-)
AMCG00018592 NA coding downstream 132182 14647092 ~ 14648105 (-)
AMCG00018598 pxn,LOC107748058,LOC107557596,LOC106579946 coding upstream 67 14784380 ~ 14797365 (-)
AMCG00018594 ctu1 coding upstream 34470 14818783 ~ 14821860 (-)
AMCG00018595 NA coding upstream 40392 14824705 ~ 14830166 (-)
AMCG00018599 NA coding upstream 54257 14838570 ~ 14849909 (-)
AMCG00018597 NA coding upstream 75444 14859757 ~ 14871803 (-)
G117338 NA non-coding downstream 75829 14703640 ~ 14704458 (-)
G117319 NA non-coding downstream 143948 14635404 ~ 14636339 (-)
G117293 NA non-coding downstream 192237 14578236 ~ 14588050 (-)
G117254 NA non-coding downstream 301350 14478095 ~ 14478937 (-)
G117253 NA non-coding downstream 303068 14476990 ~ 14477219 (-)
G117438 NA non-coding upstream 49543 14833856 ~ 14835725 (-)
G117441 NA non-coding upstream 72107 14856420 ~ 14857595 (-)
G117472 NA non-coding upstream 194728 14979041 ~ 14980384 (-)
G117501 NA non-coding upstream 429855 15214168 ~ 15214431 (-)
G117646 tbx1 non-coding upstream 1238285 16022598 ~ 16025073 (-)
G117377 NA other downstream 41975 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 259412 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 517133 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1052417 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1523037 13253085 ~ 13257250 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 714349 15498662 ~ 15518315 (-)
G117784 NA other upstream 2224585 17008898 ~ 17009301 (-)
G117823 NA other upstream 2441777 17226090 ~ 17256271 (-)
G117899 NA other upstream 2819043 17603356 ~ 17603848 (-)
G118075 NA other upstream 3682055 18466368 ~ 18474245 (-)

Expression


Co-expression Network