G117438


Basic Information

Item Value
gene id G117438
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14833856 ~ 14835725 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147148
CCAATGCATCCACATGATTATTAATACCGTGTTGGGACATGGACGGCTCCAGTATAACCCCAACATCTCCACGACTGCACAATTTGATGCAGCAGCAATTGCTGTTGTGGGGccaaaacatgaaaatacacCAAGCCCTTCTCAAAGCTACTTTTCAATTAAGTATGGTCAAGCCTAGCCATAAGATTGTgcaatgcagagagagagaggggaataaACTCCAAAAGCAGTATTTGATtgcaggtttattttaaaaagtacaaatgtgtaatatatatataaaataaaaacattggtCAAATTATGTCATTCATATTCTGAGGTAGGAGACTTAACTGGCAAGTCCCTTGAATCACCAGCTACCCAATGCAATACCATCTCAGTGTTAAAACAAACGCTACATCCAGACTCCCCAGAGAGCCATGCAGCAGGAGAGCGGAGCCACTCTCTCCCTTCAGACCATCCTGCAACCATGGCATCCATCCTCTGCTCCCCGCTGTCTGCAACAGGGTTGTTTTCTTCCTATTCAGGTGGCTGATTtgtgaaaggcgctatattAACAATTGACAGTTGGATTTTGGGAGCAGATGTGTGTCCAGAGAGATGCAGTTTCGAAGCTCAAGTAGAACGAACTGTCTATCTTTTTACATAAACAGTATGGACAAGCAGCCCATGCATCCTCCCAGGCTCCACTGCTGATATCAGCTCAAAGGCAGCAGTCTTGGAGACGAGCTTCTTTAAGAGGTACAGGGGGGACAAGCTGTTTTTGCAGTGGTTTGGACTGGATATTCAGGGGAAATGTGTGGGGGGTGGTGAGGAGAGGACCTGCCCCTGCCAGAGCAGAGATCACAGGACTGCAGCCAAGAGCTGAGGGTACAAAACCACCCCCATTGACTTCCGCTCccattttgatttgattgttttctttaaaattggCAGTTATTCATGATTTTCCCCACTTCCACGTTCCAATGTCACAAAGCTCCACACTGTGCCTGTCCTTCACCCCCCTTTCCTGTCCTCACCCTCACCATACCAATTAAGGTACTCACATAAGGTAGACTCACCAGGAAAaagataatatttatatataaaagattattattattatttttttaaatcaggagGATATATAAACCACATTTCTGGTTATTTGACTTGAGAAAAACCTGAGGGAACAGGGGCATTGGGATTTGGGGTGTGATTCCATCGCCTTTTATAAATTTCGTGTGCACTTCTCAGTTTTAATAAAcaactctttaaaaaaaataaaaaatagaggAATGTAGTTTAAGAATTGGCAGTTTTGTagttctcatttttttttttaaaggcacttTTCTACATTTGGAGAAACAGAATACTAAGATTAGTAGGACAAAAtatggaactatatacaggtCTCTCAACAATATACCAGTCACCAGTAAGAACGTCTTTGGTTTAAGTTTTTGGTCTTATTTCTGCTCTATTCAGTATTTGCGAGCCAGAACTGGTCGACCCGGTCCTGCAGATCCACATTGTCCCTGGGTTCTGTGCTGAGCAATTTGGCCATTCCAGTTAAAAGGTTAGGGGGCTCAGCTGGAACACAACACAAAATCTCCAAATCTCCGCTCTCCAAATacaagacaaaacacaaaagatcACTATTGTGTCCTGCTCTAAATGTCCTCATCCAAGTCCTTGTATACATCGTCCATGCTGTCACAGCTCTCCGTCTCACTGCCGCTGTTAACCTGATGCCCTCTCCGCTGGCTCAGGTGCTTCTCACAGTGCTTCAGGAAGACGCCCAGCATGCAGAAAGTGCGTCTGCAGACTAGGCAGTGAAACAGCCGCCTCCTGTCCACACAGCCTGCCCCAAAACCCCGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147148 True 1870 lncRNA 0.44 1 14833856 14835725

Neighbor

gene id symbol gene type direction distance location
AMCG00018595 NA coding downstream 3690 14824705 ~ 14830166 (-)
AMCG00018594 ctu1 coding downstream 11996 14818783 ~ 14821860 (-)
AMCG00018598 pxn,LOC107748058,LOC107557596,LOC106579946 coding downstream 36491 14784380 ~ 14797365 (-)
AMCG00018596 rplp0 coding downstream 55001 14773974 ~ 14778855 (-)
AMCG00018590 gcn1,LOC107699625,LOC107553027,LOC104958133,LOC107698162,LOC104964287 coding downstream 63526 14750279 ~ 14770330 (-)
AMCG00018599 NA coding upstream 2845 14838570 ~ 14849909 (-)
AMCG00018597 NA coding upstream 24032 14859757 ~ 14871803 (-)
AMCG00018601 NA coding upstream 39026 14874751 ~ 14875404 (-)
AMCG00018607 sept5 coding upstream 44874 14880599 ~ 14885351 (-)
AMCG00018606 LOC106580435,LOC105014311,LOC108265487 coding upstream 64087 14899812 ~ 14923007 (-)
G117432 NA non-coding downstream 49543 14780287 ~ 14784313 (-)
G117338 NA non-coding downstream 129398 14703640 ~ 14704458 (-)
G117319 NA non-coding downstream 197517 14635404 ~ 14636339 (-)
G117293 NA non-coding downstream 245806 14578236 ~ 14588050 (-)
G117254 NA non-coding downstream 354919 14478095 ~ 14478937 (-)
G117441 NA non-coding upstream 20695 14856420 ~ 14857595 (-)
G117472 NA non-coding upstream 143316 14979041 ~ 14980384 (-)
G117501 NA non-coding upstream 378443 15214168 ~ 15214431 (-)
G117646 tbx1 non-coding upstream 1186873 16022598 ~ 16025073 (-)
G117710 NA non-coding upstream 1459105 16294830 ~ 16296445 (-)
G117377 NA other downstream 95544 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 312981 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 570702 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1105986 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1576606 13253085 ~ 13257250 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 662937 15498662 ~ 15518315 (-)
G117784 NA other upstream 2173173 17008898 ~ 17009301 (-)
G117823 NA other upstream 2390365 17226090 ~ 17256271 (-)
G117899 NA other upstream 2767631 17603356 ~ 17603848 (-)
G118075 NA other upstream 3630643 18466368 ~ 18474245 (-)

Expression


Co-expression Network