G117574



Basic Information


Item Value
gene id G117574
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15693213 ~ 15695253 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU147318
TAGCTTTTGGGTCCTGTGTATTCAGGGTTACCTCctcaaaatgtactgtatttaccTTTCCTGATGAAGATAGGTGAAAGTAGACTAGTGGTGAGTGGAAGTTTATTCCAAAGAGCTAATAAATGCCAAGGAGAATGGGACGGACTAACAGATAAACTTACTAGAGAAGTTCATAACCAAAGTTAAATTGTGAGTAAATGTTTGATATAGCAGACTAAATTATTTAGCgtttttttgttagttattttcctgtacaaaacaaaatctacagTGAGACCTTTCTCGTGTCTATCTAACCACTGTATTTATGACCAATGAaagtctttgtttgttttgcaaagtaAAACTTCTGCTGACTGGTGGGCTGGTAAAACTGTAAACTTTCGGTTTTGCTAAAAGTTTACAATGTTCCCGCAatccattgtttttttctttcttttttttcttttttgttacaGGGGTCCTTCTCAGAATTGTACTTGCCTGTGTCTTAACAGGGTTTGAGTTGTATATTCTTTTCAGTTCAGAccaaaaacagacaacaaacaaacaaggaaacaaattgTAATCAGATTTAAAGATGTGAAGTTTTAAGTTTGCCTGTTAGCTTAGGTTAGATGTGTGAAGCTCGAACTGAAAATAATAGGAGTGGAttggatgtttttcttttttttttttggttagaaACGACCTTTTTcttgtttccaaattttcaaCTGGATTTGTACCCACCACAGTGATACTGGTATAGAATGTTATCAACCCTTTACTGGAGTCTTTACAGTTGTTCCTCATTCTCAGAGTTGATATGATAGTAATGATACTATTAACAATGACAAAGTCTGAGCCCTCTTGTAGGCCAATTGCATGATGTTACTGAGTAAGGGTGAATGTTACTAAAGAaaacataacaacaaaaatgaaaactacaagaaaacaaatccgTTACCCCTTGCCAATATGAGCAAGTCCCTGAGAGAAACCGATGCCCTTTGGATTGTAGGAAAGAGAGATTGTCCAGCTTCTTATTCCTGTACGATGTTGTATGTAGAGGGACCTTCACTGCGCAAGTCTTGGATAGGCATTCCTTTactcattgatttttttatattttgttctccCTTCTCCAAAGTCCTCTTATTATTTTACCAGTGCATTTTATGTCATTGTTGGGATGCAGCTATGGTCAAAATTTGAACGAATGAGTGCAGTTTAAGGCTCTGTGTCCTGGATTCCTGCcgtcttctctttttttattgtgggAAAATTccaagctttttttattttatttctgccttTAGTAAAATTAGTTGTGTTCAGAGATCATACTAAGAAACTCCTTGTTCTCTAtgtcctatatatattttttaatagttttaagtcACATGTAGTCTTTCAGAGAACAAGGTTAATTGAAAACTCTTGTGGCACAGCACCTTGCAGTCTTAAGGGCCTATACAGCTCTATTTGCTGCACAAAGTGCCACGTTTTCTTCCCCCAGCCATTTTAAAACTATAGTCTTAACCTTCACCATTAATGCTGAAGCTAGTATGAAATGGAGGAcatcacttaattttttttttcctgattttcTGATGAAACGAtgcatgctgtttttttgtttttgttttttctttccattcagGAATCCTTGATGCATTGCTTGTAAACCAATGTGTACTTATCAGCACTTAATCAGTACAGCATAATGTCTGTGTTAAGCAAGGATATATTGTACAGCAGGATCTCTCTTTCTCAGTAAATAAGTAGGTGCGTGCAGTAGAATAATCTTCTAAaagaaaacgaaaaaaaaaaacgaaaaaaaaaaaaaactccaaactGTGACAGTAATACTACTACTCAAAACTTCAGGGATAGTTCTGTACGGTTGAGTATAGGACTTTCAGCTACATTTGTAAGACATAGTATTGTatcaatttctgtattttaatgatgaaaagcaaaacactaGTTTCCTATTTAAGATTTTAAGAGGGGGGTACTTTTTTCAATTAACACAAAGCCTCGACAAGAGGTTGGG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU147318 True 2041 lncRNA 0.35 1 15693213 15695253
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Neighbor


gene id symbol gene type direction distance location
AMCG00018624 NA coding upstream 1472 15682455 ~ 15691741 (+)
AMCG00018620 NA coding upstream 23544 15668815 ~ 15669669 (+)
AMCG00018618 NA coding upstream 45038 15637974 ~ 15648175 (+)
AMCG00018619 NA coding upstream 108126 15583593 ~ 15585087 (+)
AMCG00018611 ppil2 coding upstream 224831 15430284 ~ 15468382 (+)
AMCG00018623 NA coding downstream 77056 15772309 ~ 15777303 (+)
AMCG00018625 NA coding downstream 90640 15785893 ~ 15790897 (+)
AMCG00018630 tbx1,LOC102781442 coding downstream 317034 16012287 ~ 16025098 (+)
AMCG00018635 NA coding downstream 560944 16256197 ~ 16278801 (+)
AMCG00018637 NA coding downstream 585580 16280833 ~ 16286663 (+)
G117557 NA non-coding upstream 65494 15627339 ~ 15627719 (+)
G117521 NA non-coding upstream 163872 15492246 ~ 15529341 (+)
G117380 NA non-coding upstream 793295 14855079 ~ 14899918 (+)
G117389 NA non-coding upstream 896063 14796531 ~ 14797150 (+)
G117388 NA non-coding upstream 898974 14793885 ~ 14794239 (+)
G117573 NA non-coding downstream 173 15695426 ~ 15698865 (+)
G117660 NA non-coding downstream 388100 16083353 ~ 16121445 (+)
G117768 NA non-coding downstream 1053616 16748869 ~ 16749971 (+)
G117783 NA non-coding downstream 1313645 17008898 ~ 17009246 (+)
G117801 NA non-coding downstream 1458529 17153782 ~ 17155824 (+)
AMCG00018602 LOC102789415 other upstream 711508 14954564 ~ 14981705 (+)
G117383 NA other upstream 905080 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 916103 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 1280934 14408958 ~ 14412279 (+)
G117178 NA other upstream 1345472 14345090 ~ 14347741 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 1372959 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 2285887 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 3023953 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 3132344 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 3199082 18894335 ~ 18908956 (+)

Expression


G117574 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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G117574 Expression in each Bioproject

Bar chart with 7 bars.
G117574 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network