G117646 (tbx1)


Basic Information

Item Value
gene id G117646
gene name tbx1
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16022598 ~ 16025073 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147400
gagtctgtgtctgtgctctcAAATGTCTAGTCTTGGAAAAAGAGTTTGCCAAATGTTGTGGTCAATGAGCAGTGAGTACATCCTGTAGGCAATGGAACTGAATAATAGTATATCACCAGGTGTGATCCTTGGCATAGAAACgaagatgtgaaaaaatatttaacctCAGGTGTCATGACATAGGCTTCAGATCAGACACAGCTCCTTTTCCTCACATTATTGTGCATGTAATATATGCTTTAACCCCTATTAAAAGAAGTTAAATCTATtgttaagacatttaaaaacataaccgATGGGATTGAATCCCTTACTTTCTTTCAATTCAAATGGCATGCTTTAAAGAGAAGATAAATAAAGATTTGTAAGggtttacagtaaaatatttaattatttttttacagttacagCACAGAAATCTTTGtatctattgtttttatttttttattttaagtaatcttTTGCAGGTCAGTGCCATGTGACGAGTGCTCCTCTGTATTACTCATGACGTTCCAAAGTGTCAAAACAATCTTGTCGGTTTTGCTCTCCGAAACAAATAGCGAAGACAACCAAGTTATCTTCAAAGAGCTGAGCTCACAGATCTCTCGTCAATCTAAAAGCTTGATGGGTTCAAAAGTATAACATATggcttgtttttaaagcaaaaaaaagtgcatccaacacaaaatgaaattcCAGTCTGTGGTTATCTATCATCCTTTTTCTCATCAGAGAGTCTTCTTGTGTTCTCTGTAAGCTCGTTCACAGCTCACACCACACCCATGGGTGCAGAAGTCTTGCTCAAGAGTGCTCTTGGTATCACAGTTCAAAGGAGCTGCTGGGCAGTCTTCAGGGGGAGCTTGTGTGATCCACCTGCATCCTCCTGTACTGGCCGTGAAGGACGCCCCGCTTCTTGTTAAACCACCCTTCCTTAATAAATATCGGAGGCTTCCAAGCAGATCCATTCACAGGAGTGTTATTCCCAGAAGTTATAACACTTTAATTTAGCAATGCACGCGAAAATAGTGTTTTGATTTCCTTGTCTCACGTTGCCGTGCACTTCAACCATTTCTGTGtacatatatagttttatatatatatacattacttaAAACAAAGCTGTTATCTAGGGCCGTAGTCGTAATTTGCAGGGGCTCCGGCAGCAGAGTACATGTTGGCAGCAGCGGGGTTCATATGGTGGTGGTAGCCGTGCCCCCGGATACTGGGCAGTGGGTAGGGAGACGGCCTGGTCTTGGCTCCCAGGTAGTGTTCGTAGGTGCTGGGGTACTTGTaggggtggtggtggagggTGTCGGGGGCTTGGGGGTGCCCATCAAGCCGCAGTTCGTGGGGGGGGCTGGGGCGTCCCGTGGTCAGGGGGACAGGGTGCAGCCCGCCTGGGACAGGGAGTGCCGGGCTCAGGACGCGTGACATCAGCTGGTGGGCGGGGTCGCCGTGGATGGGGGTGCTGCTGGGGTCGCGGTCATACTCTCGCCGGCTGTCTACTTCTGGATCAAACGGCACCACAGACTTTCTCGGTGCCGTTCTGCTGTGGGGGGGATGACATGGGGTTCCTGGTCCTGGCGAAGGCACTCATGATTGGCAGGGATCCTGGCCGGTGATTTCTCGGCCTAACATGGGCAA

Function

symbol description
tbx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein homodimerization activity. Acts upstream of or within animal organ development; pharyngeal system development; and positive regulation of secondary heart field cardioblast proliferation. Predicted to be located in nucleus. Is expressed in several structures, including cardiovascular system; mesoderm; pharyngeal arch; shield; and vestibuloauditory system. Used to study DiGeorge syndrome and velocardiofacial syndrome. Human ortholog(s) of this gene implicated in DiGeorge syndrome; tetralogy of Fallot; and velocardiofacial syndrome. Orthologous to human TBX1 (T-box transcription factor 1).

NR:

description
PREDICTED: T-box transcription factor TBX1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147400 True 1644 lncRNA 0.46 2 16022598 16025073

Neighbor

gene id symbol gene type direction distance location
AMCG00018628 cltcl1,LOC106585059 coding downstream 127774 15863081 ~ 15894824 (-)
AMCG00018629 slc25a1b,LOC107665756,LOC107751928,LOC108247150,LOC107704153,LOC107706761 coding downstream 173647 15831182 ~ 15848951 (-)
AMCG00018627 NA coding downstream 197151 15795181 ~ 15825447 (-)
AMCG00018626 pi4ka,LOC108425210,LOC107751806 coding downstream 238052 15752336 ~ 15784546 (-)
AMCG00018622 ube2l3,ube2l3b,ub2l3,LOC106562742,LOC107599129,LOC105014760 coding downstream 365143 15648519 ~ 15657455 (-)
AMCG00018631 NA coding upstream 7627 16032700 ~ 16050889 (-)
AMCG00018634 NA coding upstream 35633 16060706 ~ 16081326 (-)
AMCG00018633 arvcf coding upstream 64912 16089985 ~ 16096022 (-)
AMCG00018632 arvcf,LOC102781924 coding upstream 90892 16115965 ~ 16143336 (-)
AMCG00018640 trmt2a,LOC107687689,LOC106580466,LOC107672731 coding upstream 264761 16289834 ~ 16293685 (-)
G117501 NA non-coding downstream 808167 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 1042214 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 1165003 14856420 ~ 14857595 (-)
G117438 NA non-coding downstream 1186873 14833856 ~ 14835725 (-)
G117432 NA non-coding downstream 1238285 14780287 ~ 14784313 (-)
G117710 NA non-coding upstream 269757 16294830 ~ 16296445 (-)
G117809 NA non-coding upstream 1128929 17154002 ~ 17155261 (-)
G117853 NA non-coding upstream 1441061 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 1489784 17514857 ~ 17515120 (-)
G117888 NA non-coding upstream 1559678 17584751 ~ 17585098 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 504283 15498662 ~ 15518315 (-)
G117377 NA other downstream 1284286 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 1501723 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 1759444 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 2294728 13645368 ~ 13727870 (-)
G117784 NA other upstream 983825 17008898 ~ 17009301 (-)
G117823 NA other upstream 1201017 17226090 ~ 17256271 (-)
G117899 NA other upstream 1578283 17603356 ~ 17603848 (-)
G118075 NA other upstream 2441295 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 2513345 18538418 ~ 18547368 (-)

Expression


Co-expression Network