G117808 (znrf3,LOC106584905)


Basic Information

Item Value
gene id G117808
gene name znrf3,LOC106584905
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17224012 ~ 17224609 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147622
CTGCACGATCTCGCCCTCCGCACTGATCGTGGCCCCCGCTCTGGAGAAGCGCCCCTGCAGCCCCGTGGTGTACGTCGTGTAATCTCCATTGGGACTGGACTCGAAGAGCACCACTTCCACAAAGGCAGTATCCTTGGCCAGGATCGGTCCCGGAGACGTGGTGGCCACCAGGAGCACCAGGACCACCGCATCTGCGAAATAAGCCCCCCCTCGCCGTGGTGAAATCATCTTGCCGGCTGGATCAGCGCCGATCGGAACATAATTTCcagtttttttggggggtaaaGCCCTGGGCTGCTTCTGCAAAGGAGACGTCGGGGAGAAAGTTGGAGCGCACAGGggagatctctctctctctctctctctcgctctctctctctttccctcttcttctgcttctgGATTGTGCAACGGGAACTCAATGCCGCAGACTGGACGTGTTTATTTCACCATTGCAGCCTTGTCAATTGcaaggctctctctctctctctctctctccagctctacAAAGCGGATCTCCTTTGATCTCCAAACACGtgatttttttagatttttttttctctctctctctctctctctctctctctctctctctctc

Function

symbol description
znrf3 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in cellular protein metabolic process; negative regulation of Wnt signaling pathway; and stem cell proliferation. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be integral component of plasma membrane. Orthologous to human ZNRF3 (zinc and ring finger 3).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase ZNRF3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147622 True 598 lncRNA 0.54 1 17224012 17224609

Neighbor

gene id symbol gene type direction distance location
AMCG00018647 LOC106592780 coding upstream 74656 17141389 ~ 17149356 (+)
AMCG00018648 NA coding upstream 133990 17071354 ~ 17090022 (+)
AMCG00018641 NA coding upstream 789709 16419039 ~ 16434303 (+)
AMCG00018636 pgam5,LOC107089933 coding upstream 845311 16373896 ~ 16378701 (+)
AMCG00018638 ranbp1,LOC106580467,LOC107684983 coding upstream 925301 16296038 ~ 16298711 (+)
AMCG00018654 NA coding downstream 28546 17253155 ~ 17256857 (+)
AMCG00018655 NA coding downstream 66093 17290702 ~ 17296987 (+)
AMCG00018659 taok3 coding downstream 322351 17546960 ~ 17574431 (+)
AMCG00018662 NA coding downstream 353326 17577935 ~ 17584564 (+)
AMCG00018663 NA coding downstream 360911 17585520 ~ 17593696 (+)
G117805 NA non-coding upstream 62289 17161514 ~ 17161723 (+)
G117804 NA non-coding upstream 62972 17160762 ~ 17161040 (+)
G117801 NA non-coding upstream 68188 17153782 ~ 17155824 (+)
G117783 NA non-coding upstream 214766 17008898 ~ 17009246 (+)
G117768 NA non-coding upstream 474041 16748869 ~ 16749971 (+)
G117813 NA non-coding downstream 26260 17250869 ~ 17253023 (+)
G117887 NA non-coding downstream 360142 17584751 ~ 17585112 (+)
G117959 NA non-coding downstream 754402 17979011 ~ 17980939 (+)
G118005 LOC101154678 non-coding downstream 993194 18217803 ~ 18218099 (+)
G118013 NA non-coding downstream 1241759 18466368 ~ 18730812 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 154342 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2242307 14954564 ~ 14981705 (+)
G117383 NA other upstream 2435879 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 2446902 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 2811733 14408958 ~ 14412279 (+)
AMCG00018681 NA other downstream 756531 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 1494597 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 1602988 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 1669726 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 1998559 19223168 ~ 19234351 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_03040871_03042232 NA coding CI01000071 null 3040747 ~ 3042647 (-)