G117809


Basic Information

Item Value
gene id G117809
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17154002 ~ 17155261 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147623
ttttagcttTGACAAACACAGGAAAGTGGTAATATGGAGAAATGCCAAAATTTAGCACCGTTTCCTTTAACCCAGAATTGTTGTGCCCTTTCACGTTGTAGTTCTTGTTGATATTCGTCTGGGTTTCAGGAAAACCAGTCTTACAGATGTGCTCTGCTTGAGTTAGGAAAACCAGGTGACACCAGGACATCAGGCTTTGCTCTTGGGAGCATCAGCCCTCCCGTACACTCAGGGCTACTGCTGCCTTAGTAGCAAACTAGCATTTAAtagtgtttgttgtttgtcGTCGATTCGTGTAGTTTGGTTTCAGCACTGTAGCTTTGTGATGAACAAAAGAGCTAATGAGTAACAAATAGAGCTACGTTATAACAATGGTATAACAGAGGTAACAAATAGTTATAGCAGTGGCGTAACAGGGAAATAATAGACTAATTTTGCAAGTCTAACTTTCATAGCACAGTTTGGGTGTGTCAGTCCGTTCTCTACAGTGTCTTTCTGACCTTTTGCGTAGCCTTTTTCTACTGGGCCCCCAGACCTTTTTAAAGTCTGTGTTGTATagtcattataatatatacaggtAGAGAAGCACAGCTTAATTCTGATTGTCAGAAAAAGGCCAAAGTCAAGTAGTCGAGAGAGATGGTTGAAAGACCGATGAATCCCCAAAGGCGGATTTCGAAAAAGTGTCTCCACTTTTTAACATTATAAACCTTTCAGATGTTGTCAGTGTATAtgccttttgtgtttgttttgcagacttTTTATACTGTTTCTATGAAATGTATCCATACTGCTAAAAGACTACCAGTTTTAAATGCCCTATTTATAACTCAGTGCTGTAATTAATGATTACTATAAGAATCTAATCTTGCCTTTTCTTAGAGATCTGTActacaaatataacatttttggGTACTTCAGGcactatttaatttttttttatttgtagcaCTTAAAAGGattgtataaaaatgtaatatttttaattttttaatgtaattattttctccGTCATTaccattttacaatgttttaaaaggcTAGAAAATCAATCtgtgtatatttctgtatatgtaTAGCAGCACATTTCATTTATGGAAATATGTtctctgaatatttatttactaatatatttatctttaagCCATGTCTTATGTTGAGAGTGTATGAACGTTattgaaatcattttttttgtttgtttgagaaaTCACTAACATGAGACTTTGTAAATACATGATAATTGCACACAAAGATTAAATA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147623 True 1260 lncRNA 0.34 1 17154002 17155261

Neighbor

gene id symbol gene type direction distance location
AMCG00018650 NA coding downstream 83312 17068212 ~ 17070690 (-)
AMCG00018649 galnt9,LOC103141400,LOC106920899,LOC106962167 coding downstream 176919 16963043 ~ 16977083 (-)
AMCG00018651 LOC106920899,LOC106940379,LOC107600134 coding downstream 230408 16912767 ~ 16923594 (-)
AMCG00018646 LOC106580457 coding downstream 406041 16747653 ~ 16747961 (-)
AMCG00018645 NA coding downstream 668414 16464741 ~ 16485588 (-)
AMCG00018652 znrf3 coding upstream 959 17156220 ~ 17168116 (-)
AMCG00018653 znrf3,LOC106584905 coding upstream 23828 17179089 ~ 17224239 (-)
AMCG00018656 NA coding upstream 112328 17267589 ~ 17290539 (-)
AMCG00018658 NA coding upstream 143003 17298264 ~ 17304621 (-)
AMCG00018657 NA coding upstream 153882 17309143 ~ 17316875 (-)
G117710 NA non-coding downstream 857557 16294830 ~ 16296445 (-)
G117646 tbx1 non-coding downstream 1128929 16022598 ~ 16025073 (-)
G117501 NA non-coding downstream 1939571 15214168 ~ 15214431 (-)
G117472 NA non-coding downstream 2173618 14979041 ~ 14980384 (-)
G117441 NA non-coding downstream 2296407 14856420 ~ 14857595 (-)
G117853 NA non-coding upstream 310873 17466134 ~ 17466434 (-)
G117856 NA non-coding upstream 359596 17514857 ~ 17515120 (-)
G117888 NA non-coding upstream 429490 17584751 ~ 17585098 (-)
G117916 NA non-coding upstream 579415 17734676 ~ 17736324 (-)
G117933 NA non-coding upstream 605289 17760550 ~ 17761560 (-)
G117784 NA other downstream 144701 17008898 ~ 17009301 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 1635687 15498662 ~ 15518315 (-)
G117377 NA other downstream 2415690 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 2633127 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 2890848 14242545 ~ 14263154 (-)
G117823 NA other upstream 70829 17226090 ~ 17256271 (-)
G117899 NA other upstream 448095 17603356 ~ 17603848 (-)
G118075 NA other upstream 1311107 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 1383157 18538418 ~ 18547368 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 1589873 18745134 ~ 18746820 (-)

Expression


Co-expression Network