G117887


Basic Information

Item Value
gene id G117887
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17584751 ~ 17585112 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147720
cagcagtggacaggggtcagcatgggcaccctgactggtctgcagctacgcagccccatacgcaacaaactgcgatgcactgtgtgttctgacacctttctatcagaaccagcattcactttttcagcaatttcagcagtctgttggatcggaccacacgggccagccttcgcttcccacgtgcatcaatgagccttggccgcccatgaccctgtcgccggttcactgcttttccttccttggaccacttttgataggtactgaccactgcagaccaggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccttgtcaaagtcgctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147720 True 362 lncRNA 0.54 1 17584751 17585112

Neighbor

gene id symbol gene type direction distance location
AMCG00018662 NA coding upstream 187 17577935 ~ 17584564 (+)
AMCG00018659 taok3 coding upstream 10320 17546960 ~ 17574431 (+)
AMCG00018655 NA coding upstream 287764 17290702 ~ 17296987 (+)
AMCG00018654 NA coding upstream 327894 17253155 ~ 17256857 (+)
AMCG00018647 LOC106592780 coding upstream 435395 17141389 ~ 17149356 (+)
AMCG00018663 NA coding downstream 408 17585520 ~ 17593696 (+)
AMCG00018669 ksr2 coding downstream 53155 17638267 ~ 17677169 (+)
AMCG00018670 nos1,LOC102776628 coding downstream 119382 17704494 ~ 17728160 (+)
AMCG00018671 NA coding downstream 147467 17732579 ~ 17740121 (+)
AMCG00018672 nipsnap1,LOC106579802 coding downstream 157840 17742952 ~ 17749119 (+)
G117813 NA non-coding upstream 331728 17250869 ~ 17253023 (+)
G117808 znrf3,LOC106584905 non-coding upstream 360142 17224012 ~ 17224609 (+)
G117805 NA non-coding upstream 423028 17161514 ~ 17161723 (+)
G117804 NA non-coding upstream 423711 17160762 ~ 17161040 (+)
G117801 NA non-coding upstream 428927 17153782 ~ 17155824 (+)
G117959 NA non-coding downstream 393899 17979011 ~ 17980939 (+)
G118005 LOC101154678 non-coding downstream 632691 18217803 ~ 18218099 (+)
G118013 NA non-coding downstream 881256 18466368 ~ 18730812 (+)
G118043 LOC104945943 non-coding downstream 1089162 18674274 ~ 18676226 (+)
G118285 NA non-coding downstream 1871030 19456142 ~ 19456983 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other upstream 515081 17068212 ~ 17069670 (+)
AMCG00018602 LOC102789415 other upstream 2603046 14954564 ~ 14981705 (+)
G117383 NA other upstream 2796618 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 2807641 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 3172472 14408958 ~ 14412279 (+)
AMCG00018681 NA other downstream 396028 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 1134094 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 1242485 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 1309223 18894335 ~ 18908956 (+)
AMCG00018732 NA other downstream 1638056 19223168 ~ 19234351 (+)

Expression


Co-expression Network