G117888


Basic Information

Item Value
gene id G117888
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17584751 ~ 17585098 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147721
agggccaaattgtgatggctagacgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcctggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcagtgaaccggcgacagggtcatgggcggccaaggctcattgatgcacgtgggaagcgaaggctggcccgtgtggtccgatccaacagactgctgaaattgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtatggggctgcgtagctgcagaccagtcagggtgcccatgctgacccctgtccactgctg

Function

GO: NA

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU147721 True 348 lncRNA 0.55 1 17584751 17585098

Neighbor

gene id symbol gene type direction distance location
AMCG00018660 pebp1 coding downstream 7816 17574837 ~ 17576935 (-)
AMCG00018661 suds3,LOC102779790 coding downstream 55497 17516479 ~ 17529254 (-)
AMCG00018657 NA coding downstream 267876 17309143 ~ 17316875 (-)
AMCG00018658 NA coding downstream 280130 17298264 ~ 17304621 (-)
AMCG00018656 NA coding downstream 294212 17267589 ~ 17290539 (-)
AMCG00018664 rfc5,LOC107668751,LOC107716544 coding upstream 9089 17594187 ~ 17600940 (-)
AMCG00018675 c21h12orf49,clg12h12orf49,LOC104923683,LOC104949818,LOC103134957,LOC107087327 coding upstream 208467 17793565 ~ 17797572 (-)
AMCG00018677 NA coding upstream 220558 17805656 ~ 17805925 (-)
AMCG00018674 NA coding upstream 238571 17823669 ~ 17832605 (-)
AMCG00018676 fbxo21 coding upstream 249297 17834395 ~ 17840136 (-)
G117856 NA non-coding downstream 69631 17514857 ~ 17515120 (-)
G117853 NA non-coding downstream 118317 17466134 ~ 17466434 (-)
G117809 NA non-coding downstream 429490 17154002 ~ 17155261 (-)
G117710 NA non-coding downstream 1288306 16294830 ~ 16296445 (-)
G117646 tbx1 non-coding downstream 1559678 16022598 ~ 16025073 (-)
G117916 NA non-coding upstream 149578 17734676 ~ 17736324 (-)
G117933 NA non-coding upstream 175452 17760550 ~ 17761560 (-)
G117978 NA non-coding upstream 279969 17865067 ~ 17866985 (-)
G117994 NA non-coding upstream 396731 17981829 ~ 18061544 (-)
G118008 NA non-coding upstream 714750 18299848 ~ 18300107 (-)
G117823 NA other downstream 328480 17226090 ~ 17256271 (-)
G117784 NA other downstream 575450 17008898 ~ 17009301 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 2066436 15498662 ~ 15518315 (-)
G117377 NA other downstream 2846439 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 3063876 14503403 ~ 14520875 (-)
G117899 NA other upstream 18258 17603356 ~ 17603848 (-)
G118075 NA other upstream 881270 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 953320 18538418 ~ 18547368 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 1160036 18745134 ~ 18746820 (-)
AMCG00018715 ankrd13a other upstream 1252656 18837754 ~ 18845144 (-)

Expression


Co-expression Network