G117916


Basic Information

Item Value
gene id G117916
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17734676 ~ 17736324 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147764
TCAGTTCCTCAAGCACGTTGTTCACTTTAAGAGCTTCCCCAAGAGCCACAGCTCCATCCTTCCCAAATCCATTGTAAGACAAGTCTATCACACGAAGGAAAATGTTGGCCCCTAAACCTCTTGCCAGTGTGATCGATCCTCTTCCCCGCAAAGAGTTCCAGCTCAGGTTAAAAGTCTTCATTCCTGTGTTTTCAGCAATCGCGTTGCCTAACATCTCTCCTGCTCCGTCTCCCATCCGATTGTGACTCAGATCCAAGACTTCCACTTTCTGGTTGCTCACCAAAGCGTCAGCCAAGTGCTTTGCCGCATGGTCATCAAAACCGTTCCCAGAGAGGTTGATACTGACCAAAGTGGTGTTCTCCAGGAGCATGTTGCCAATGGCTTGGGCTCCTTTTCCTCCCAG

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147764 True 403 lncRNA 0.50 3 17734676 17736324

Neighbor

gene id symbol gene type direction distance location
AMCG00018664 rfc5,LOC107668751,LOC107716544 coding downstream 133736 17594187 ~ 17600940 (-)
AMCG00018660 pebp1 coding downstream 157741 17574837 ~ 17576935 (-)
AMCG00018661 suds3,LOC102779790 coding downstream 205422 17516479 ~ 17529254 (-)
AMCG00018657 NA coding downstream 417801 17309143 ~ 17316875 (-)
AMCG00018658 NA coding downstream 430055 17298264 ~ 17304621 (-)
AMCG00018675 c21h12orf49,clg12h12orf49,LOC104923683,LOC104949818,LOC103134957,LOC107087327 coding upstream 57241 17793565 ~ 17797572 (-)
AMCG00018677 NA coding upstream 69332 17805656 ~ 17805925 (-)
AMCG00018674 NA coding upstream 87345 17823669 ~ 17832605 (-)
AMCG00018676 fbxo21 coding upstream 98071 17834395 ~ 17840136 (-)
AMCG00018680 NA coding upstream 237111 17973435 ~ 17978220 (-)
G117888 NA non-coding downstream 149578 17584751 ~ 17585098 (-)
G117856 NA non-coding downstream 219556 17514857 ~ 17515120 (-)
G117853 NA non-coding downstream 268242 17466134 ~ 17466434 (-)
G117809 NA non-coding downstream 579415 17154002 ~ 17155261 (-)
G117710 NA non-coding downstream 1438231 16294830 ~ 16296445 (-)
G117933 NA non-coding upstream 24226 17760550 ~ 17761560 (-)
G117978 NA non-coding upstream 128743 17865067 ~ 17866985 (-)
G117994 NA non-coding upstream 245505 17981829 ~ 18061544 (-)
G118008 NA non-coding upstream 563524 18299848 ~ 18300107 (-)
G118010 NA non-coding upstream 577675 18313999 ~ 18314242 (-)
G117899 NA other downstream 130828 17603356 ~ 17603848 (-)
G117823 NA other downstream 478405 17226090 ~ 17256271 (-)
G117784 NA other downstream 725375 17008898 ~ 17009301 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 2216361 15498662 ~ 15518315 (-)
G117377 NA other downstream 2996364 14736138 ~ 14738312 (-)
G118075 NA other upstream 730044 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 802094 18538418 ~ 18547368 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 1008810 18745134 ~ 18746820 (-)
AMCG00018715 ankrd13a other upstream 1101430 18837754 ~ 18845144 (-)
AMCG00018723 NA other upstream 1302233 19038557 ~ 19047717 (-)

Expression


Co-expression Network