G117933


Basic Information

Item Value
gene id G117933
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17760550 ~ 17761560 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147781
GTTTATTTTCATCCAAGAAAATGTAAGATGTAAAAAATTCCTTTCTTAAGCCAAGCCGTGTTATAAGTGTTAGGTTTCACAGGGAGATTCAGAATACATAAACGTGTCCAGACCCAATAACAGGGTTTCCTTACTGTCTCTGCGTTTCGGTGTCCATGACGAGGGAGATGTAGCCCTCAAtcagggagaaggagaagaactTGATACAGTCCAGGGCCTGGGTGGGATGGGCACCATCTTTTGCactgGAGTAGAAGAGCACATCGATGAGAGTGGTTGCGATGGCCGGCAGAGTCTCAGGGTCTAAACTCATCACACAGAACTGGTTCTGGGGGCTCAGCACTGGATGCACAATGGGTTTCATGGCTTCAAGGGAAACAAGGAAATGTATGCAAGACATAGTTGTCCAACTCAACCTCAGACTGTATTAGGTGTCATGCAACTCGGTAGTAGGTATAAAAACCATGTACACAGTGCCAACCTATCTGAGTTATGAGCCTCACACAAACCTCAGATGATTAAAGGATGGTTTCCCACCTTTTGCAAACAAGGGAATTCTCCAGTTCATTCTCTTACCTTCCCTGCCATTCTTGTGAAATCCATTGCGTACATCTTTGCCGTGCACCGGGACAGACTCCCCGCCTTCTTCTCTGTAGATGTTGAACTCTTCCTCCAGGGTGTGGATGACAACAGGTAGATCCTTCTCTCGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147781 True 712 lncRNA 0.46 2 17760550 17761560

Neighbor

gene id symbol gene type direction distance location
AMCG00018664 rfc5,LOC107668751,LOC107716544 coding downstream 159610 17594187 ~ 17600940 (-)
AMCG00018660 pebp1 coding downstream 183615 17574837 ~ 17576935 (-)
AMCG00018661 suds3,LOC102779790 coding downstream 231296 17516479 ~ 17529254 (-)
AMCG00018657 NA coding downstream 443675 17309143 ~ 17316875 (-)
AMCG00018658 NA coding downstream 455929 17298264 ~ 17304621 (-)
AMCG00018675 c21h12orf49,clg12h12orf49,LOC104923683,LOC104949818,LOC103134957,LOC107087327 coding upstream 32005 17793565 ~ 17797572 (-)
AMCG00018677 NA coding upstream 44096 17805656 ~ 17805925 (-)
AMCG00018674 NA coding upstream 62109 17823669 ~ 17832605 (-)
AMCG00018676 fbxo21 coding upstream 72835 17834395 ~ 17840136 (-)
AMCG00018680 NA coding upstream 211875 17973435 ~ 17978220 (-)
G117916 NA non-coding downstream 24226 17734676 ~ 17736324 (-)
G117888 NA non-coding downstream 175452 17584751 ~ 17585098 (-)
G117856 NA non-coding downstream 245430 17514857 ~ 17515120 (-)
G117853 NA non-coding downstream 294116 17466134 ~ 17466434 (-)
G117809 NA non-coding downstream 605289 17154002 ~ 17155261 (-)
G117978 NA non-coding upstream 103507 17865067 ~ 17866985 (-)
G117994 NA non-coding upstream 220269 17981829 ~ 18061544 (-)
G118008 NA non-coding upstream 538288 18299848 ~ 18300107 (-)
G118010 NA non-coding upstream 552439 18313999 ~ 18314242 (-)
G118101 NA non-coding upstream 891206 18652766 ~ 18659398 (-)
G117899 NA other downstream 156702 17603356 ~ 17603848 (-)
G117823 NA other downstream 504279 17226090 ~ 17256271 (-)
G117784 NA other downstream 751249 17008898 ~ 17009301 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 2242235 15498662 ~ 15518315 (-)
G117377 NA other downstream 3022238 14736138 ~ 14738312 (-)
G118075 NA other upstream 704808 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 776858 18538418 ~ 18547368 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 983574 18745134 ~ 18746820 (-)
AMCG00018715 ankrd13a other upstream 1076194 18837754 ~ 18845144 (-)
AMCG00018723 NA other upstream 1276997 19038557 ~ 19047717 (-)

Expression


Co-expression Network