G117978


Basic Information

Item Value
gene id G117978
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17865067 ~ 17866985 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147839
TTAGGATTAAACTGAGCATTCGTTCacgttaaataaataagaacagtaCACAGACCAtcgtatatttatatttaatgaaggCGTCAACGTTGTTCATCAAACGGTCAATGCACTTTACATTGCAAACAGTTCATAGCGTCCCTGCTCAtaaacacaataacacattGTCAGTTTACTGTCACATCCAATAATATGAAATTCACACGATAACCTTTACGACGgcctttctatttgttttcactcgcacgtaaaaaaaaaagtgatataacCGACGTTCTTCCTTAATGTCAGTTATGTTCAGAAGCTTCACACAGTCTTGCCACTTCAAATGCAAAACTCATTTAGAGAAACTTAACACTCTTGGTGCGTCTTGAGATTTTCACTGTGGTTGTGAATGTAAAACGCTTCCCTCCAAATGCTCTGGACTTGGTCAGTGTCTTTGCGTTGGACTACATACAAGTCCGGTGTCATTTCTGCCTTCAGAGCTTGCGATTCCGGGACTTCAGTTGGGGGTTGGGGAGTCCCTTTAGGAGCCTAGAGTTCTTCGAAGAAGGCAACTCTGGATTTTGTGCTCTGTAAAGTAAGCTGCAAAAAGCGTAAAAGAGAGAGATGTTAAATGTAACGCAAGTATAAAAATACTTTACCCGCACGTCTGCTGCATCGCACCTGCTTGAAACACCAAGTAGACCTGTTTTAAAGAACAATTGCTGAAGGctgataaaatatgaatgcttacttctgtttctctttgtaCCTTTTTAGGATACAGGTGGAAGCATCAGTAGTTCTTGAGGAAAATGAAGCAGGATCTTCACCCCCCCCTCCTNNCATTATTTGTACTTGCTGATGTTACTGTGAAACACGTG
>TU147840
TTAGGATTAAACTGAGCATTCGTTCacgttaaataaataagaacagtaCACAGACCAtcgtatatttatatttaatgaaggCGTCAACGTTGTTCATCAAACGGTCAATGCACTTTACATTGCAAACAGTTCATAGCGTCCCTGCTCAtaaacacaataacacattGTCAGTTTACTGTCACATCCAATAATATGAAATTCACACGATAACCTTTACGACGgcctttctatttgttttcactcgcacgtaaaaaaaaaagtgatataacCGACGTTCTTCCTTAATGTCAGTTATGTTCAGAAGCTTCACACAGTCTTGCCACTTCAAATGCAAAACTCATTTAGAGAAACTTAACACTCTTGGTGCGTCTTGAGATTTTCACTGTGGTTGTGAATGTAAAACGCTTCCCTCCAAATGCTCTGGACTTGGTCAGTGTCTTTGCGTTGGACTACATACAAGTCCGGTGTCATTTCTGCCTTCAGAGCTTGCGATTCCGGGACTTCAGTTGGGGGTTGGGGAGTCCCTTTAGGAGCCTAGAGTTCTTCGAAGAAGGCAACTCTGGATTTTGTGCTCTGTAAAGTAAGCTGCAAAAAGCGTAAAAGAGAGAGATGTTAAATGTAACGCAAGTATAAAAATACTTTACCCGCACGTCTGCTGCATCGCACCTGCTTGAAACACCAAGTAGACCTGTTTTAAAGAACAATTGCTGAAGGctgataaaatatgaatgcttacttctgtttctctttgtaCCTTTTTAGGATACAGGTGGAAGCATCAGTAGTTCTTGAGGAAAATGAAGCAGGATCTTCACCCCCCCCTCCTGACATTATTTGTACTTGCTGATGTTACTGTGAAACACGTG

Function

NR:

description
PREDICTED: peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147839 True 866 lncRNA 0.40 2 17865067 17866985
TU147840 False 866 lncRNA 0.40 2 17865067 17866985

Neighbor

gene id symbol gene type direction distance location
AMCG00018676 fbxo21 coding downstream 24931 17834395 ~ 17840136 (-)
AMCG00018674 NA coding downstream 32462 17823669 ~ 17832605 (-)
AMCG00018677 NA coding downstream 59142 17805656 ~ 17805925 (-)
AMCG00018675 c21h12orf49,clg12h12orf49,LOC104923683,LOC104949818,LOC103134957,LOC107087327 coding downstream 67495 17793565 ~ 17797572 (-)
AMCG00018664 rfc5,LOC107668751,LOC107716544 coding downstream 264127 17594187 ~ 17600940 (-)
AMCG00018680 NA coding upstream 106450 17973435 ~ 17978220 (-)
AMCG00018684 NA coding upstream 115644 17982629 ~ 17983909 (-)
AMCG00018682 NA coding upstream 117494 17984479 ~ 17985764 (-)
AMCG00018683 NA coding upstream 134758 18001743 ~ 18021214 (-)
AMCG00018690 NA coding upstream 662437 18529422 ~ 18532311 (-)
G117933 NA non-coding downstream 103507 17760550 ~ 17761560 (-)
G117916 NA non-coding downstream 128743 17734676 ~ 17736324 (-)
G117888 NA non-coding downstream 279969 17584751 ~ 17585098 (-)
G117856 NA non-coding downstream 349947 17514857 ~ 17515120 (-)
G117853 NA non-coding downstream 398633 17466134 ~ 17466434 (-)
G117994 NA non-coding upstream 114844 17981829 ~ 18061544 (-)
G118008 NA non-coding upstream 432863 18299848 ~ 18300107 (-)
G118010 NA non-coding upstream 447014 18313999 ~ 18314242 (-)
G118101 NA non-coding upstream 785781 18652766 ~ 18659398 (-)
G118100 NA non-coding upstream 789480 18656465 ~ 18657534 (-)
G117899 NA other downstream 261219 17603356 ~ 17603848 (-)
G117823 NA other downstream 608796 17226090 ~ 17256271 (-)
G117784 NA other downstream 855766 17008898 ~ 17009301 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 2346752 15498662 ~ 15518315 (-)
G117377 NA other downstream 3126755 14736138 ~ 14738312 (-)
G118075 NA other upstream 599383 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 671433 18538418 ~ 18547368 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 878149 18745134 ~ 18746820 (-)
AMCG00018715 ankrd13a other upstream 970769 18837754 ~ 18845144 (-)
AMCG00018723 NA other upstream 1171572 19038557 ~ 19047717 (-)

Expression


Co-expression Network