G117994


Basic Information

Item Value
gene id G117994
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17981829 ~ 18061544 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU147865
ttttttttttggcgTTTGAAGAGTATTTATTACTAATTAAATGTCAATACATTAAACGATAAATCACAGGTGGATGATGGCCAGAGTGGTGTCCGCTGTTGGTCGTGGCGGCTGGAGGGAATTGAGTTGAGTGTCTATTGCCGGGCATGGCGACCCGGGGGTTGGGGGTCCGAGGTCTCCTACTGGGGGTCTCCACCAGTGCTGGGGAATGGCATCAGGACCGATCGCAGTCCCGCACAGAGGCACGTCATTCTTCCTTCTCGTAGTTGTGCTTAATGTGTTTCCACAGtttct

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055006 cardiac cell development biological_process
GO:0055011 atrial cardiac muscle cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147865 True 294 lncRNA 0.50 2 17981829 18061544

Neighbor

gene id symbol gene type direction distance location
AMCG00018680 NA coding downstream 3609 17973435 ~ 17978220 (-)
AMCG00018676 fbxo21 coding downstream 141693 17834395 ~ 17840136 (-)
AMCG00018674 NA coding downstream 149224 17823669 ~ 17832605 (-)
AMCG00018677 NA coding downstream 175904 17805656 ~ 17805925 (-)
AMCG00018675 c21h12orf49,clg12h12orf49,LOC104923683,LOC104949818,LOC103134957,LOC107087327 coding downstream 184257 17793565 ~ 17797572 (-)
AMCG00018690 NA coding upstream 467878 18529422 ~ 18532311 (-)
AMCG00018689 LOC106585651 coding upstream 473981 18535525 ~ 18535910 (-)
AMCG00018688 NA coding upstream 495797 18557341 ~ 18562421 (-)
AMCG00018696 NA coding upstream 511598 18573142 ~ 18575337 (-)
AMCG00018695 NA coding upstream 516583 18578127 ~ 18586515 (-)
G117978 NA non-coding downstream 114844 17865067 ~ 17866985 (-)
G117933 NA non-coding downstream 220269 17760550 ~ 17761560 (-)
G117916 NA non-coding downstream 245505 17734676 ~ 17736324 (-)
G117888 NA non-coding downstream 396731 17584751 ~ 17585098 (-)
G117856 NA non-coding downstream 466709 17514857 ~ 17515120 (-)
G118008 NA non-coding upstream 238304 18299848 ~ 18300107 (-)
G118010 NA non-coding upstream 252455 18313999 ~ 18314242 (-)
G118101 NA non-coding upstream 591222 18652766 ~ 18659398 (-)
G118100 NA non-coding upstream 594921 18656465 ~ 18657534 (-)
G118115 srsf9,LOC107692023,LOC107560829,LOC105025588 non-coding upstream 671544 18733088 ~ 18733820 (-)
G117899 NA other downstream 377981 17603356 ~ 17603848 (-)
G117823 NA other downstream 725558 17226090 ~ 17256271 (-)
G117784 NA other downstream 972528 17008898 ~ 17009301 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other downstream 2463514 15498662 ~ 15518315 (-)
G117377 NA other downstream 3243517 14736138 ~ 14738312 (-)
G118075 NA other upstream 404824 18466368 ~ 18474245 (-)
AMCG00018687 NA other upstream 476874 18538418 ~ 18547368 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 683590 18745134 ~ 18746820 (-)
AMCG00018715 ankrd13a other upstream 776210 18837754 ~ 18845144 (-)
AMCG00018723 NA other upstream 977013 19038557 ~ 19047717 (-)

Expression


Co-expression Network