G118100



Basic Information


Item Value
gene id G118100
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18656465 ~ 18657534 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU147980
AAAATCAGACAAGGTCAGATACACAattagtttaacatttttactttattatgcTTCAAGACATGACgtttacataaaacacacacacaatacttgTACATATCATATCGGAGACACAGGTGACAAAAGGCACTATACTGTTTTGAACAAAATAGCAGTTGTGATTACAGTAAAGCTTACAATAGCACCACCTTGTACAAACTGCCAACTTCCATAAACAAAGTATCCCGCATATACTTTTCCCCCCTACTAAAATGCTGACTTATAGCAAACTCTTCTGCTATACTTGACATGAAAAGCTAACCAATGGGAATTGAgcaaaagataattaaatgtgaatatttttgcAATGAGAATACTCTTTTCTCTCctgttatatttaaattcaaatttgggatattttacatgataaaaaaaaagcaaatcagCCTCAATGCAAATCTTTCAATGACAATCAAAAAACTATAATGCTTGCatgtaatagtaatatataaacaaagaaCACAAATCAAAGATGGGGCTCAAAGTTGTCTTTTAATTGTAACATTGGGGAATTATTAAAGAACAGAACATTCAGAGGGTTTTCTTGTTTaaccaaagcattttatatttcaattaacCAGTTAGCCAACTTCAAAATGACAGGTGTGTTTCaagtaataatttgtttttttaataattctgcCACTGGAATCTTTTCCAAAAATTAAACTGGGCAACTTTTTGGTTTTGCAGTCTATCATGCAAGTAAGAATCAGTATGTACATATTAAAAAGCAGATTCACGTGGTGGAGGTACTGTGTCATGCTAGTGTACTAGTCCATACAGTCACACGGAAAGCACACGGGGAATGATTTCTGGGAGAGTGGAATGGGTGTGGAGTGACACTGAGGAACTGACTAAGGACAGGCAAGTCCTGCTAAATGTCCGAGCCCATTTCGGCACACTGCTTATCAGATATGTGAGTAGCTAAGGACTCAATGATGTCGAGCAGTAGCGGCTGGCTGAGGGACCTCAGGTTTGGTAGCTTGGAAAC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU147980 True 1036 lncRNA 0.36 2 18656465 18657534

Neighbor


gene id symbol gene type direction distance location
AMCG00018699 NA coding downstream 13316 18642499 ~ 18643149 (-)
AMCG00018694 NA coding downstream 22337 18606248 ~ 18634128 (-)
AMCG00018695 NA coding downstream 69950 18578127 ~ 18586515 (-)
AMCG00018696 NA coding downstream 81128 18573142 ~ 18575337 (-)
AMCG00018688 NA coding downstream 94044 18557341 ~ 18562421 (-)
AMCG00018704 NA coding upstream 3720 18661254 ~ 18663368 (-)
AMCG00018705 pes1,LOC106585655,LOC102794482,LOC101476782 coding upstream 17255 18674789 ~ 18683596 (-)
AMCG00018706 pole coding upstream 43398 18700932 ~ 18718832 (-)
AMCG00018709 NA coding upstream 66164 18723698 ~ 18725941 (-)
AMCG00018707 gatc,LOC102777901 coding upstream 78871 18736405 ~ 18737332 (-)
G118010 NA non-coding downstream 342223 18313999 ~ 18314242 (-)
G118008 NA non-coding downstream 356358 18299848 ~ 18300107 (-)
G117994 NA non-coding downstream 594921 17981829 ~ 18061544 (-)
G117978 NA non-coding downstream 789480 17865067 ~ 17866985 (-)
G117933 NA non-coding downstream 894905 17760550 ~ 17761560 (-)
G118115 srsf9,LOC107692023,LOC107560829,LOC105025588 non-coding upstream 75554 18733088 ~ 18733820 (-)
G118147 NA non-coding upstream 225525 18883059 ~ 18885984 (-)
G118223 NA non-coding upstream 520947 19178481 ~ 19178740 (-)
G118238 NA non-coding upstream 563763 19221297 ~ 19221632 (-)
G118239 NA non-coding upstream 567138 19224672 ~ 19227434 (-)
AMCG00018687 NA other downstream 109097 18538418 ~ 18547368 (-)
G118075 NA other downstream 182220 18466368 ~ 18474245 (-)
G117899 NA other downstream 1052617 17603356 ~ 17603848 (-)
G117823 NA other downstream 1400194 17226090 ~ 17256271 (-)
G117784 NA other downstream 1647164 17008898 ~ 17009301 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 87600 18745134 ~ 18746820 (-)
AMCG00018715 ankrd13a other upstream 180220 18837754 ~ 18845144 (-)
AMCG00018723 NA other upstream 381023 19038557 ~ 19047717 (-)
AMCG00018742 wscd2,LOC106584983,LOC105898177 other upstream 810234 19467768 ~ 19498979 (-)
G118434 NA other upstream 1330140 19987674 ~ 19988168 (-)

Expression



Co-expression Network