G118115 (srsf9,LOC107692023,LOC107560829,LOC105025588)


Basic Information

Item Value
gene id G118115
gene name srsf9,LOC107692023,LOC107560829,LOC105025588
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18733088 ~ 18733820 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU148003
CAGTCACGATGACTCTGAACTCTGATCTCCGAGTAGGTGGCCCAAACCTCCCCCGGGGCCCACCTCCCATGGGGCCACTAaatttggaggaggaggagcgtGGGTACTCAACACGCAGCTTGCAGTCTCCAAAGCCATAGCCATTCCGCCCGTAGACAGCATCCTCCGCATCCCGTGGGTCTTCAAAACGGACGAAGGCGAAGGGGATGGTGCCCCTGTTGTTCTTCAGCTCAATATCTCGTATCTTGCCATATTTGAAGAAGAGATCCTCAATGTCTCGTTCCTGCACATCCGTTGGAAGGTTCCCCACATAGATCCTCCCATCCGCCATGACTCAGCTGGGACCGGCC

Function

symbol description
srsf9 Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to human SRSF9 (serine and arginine rich splicing factor 9).

NR:

description
PREDICTED: serine/arginine-rich splicing factor 9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148003 True 350 lncRNA 0.56 2 18733088 18733820

Neighbor

gene id symbol gene type direction distance location
AMCG00018709 NA coding downstream 7147 18723698 ~ 18725941 (-)
AMCG00018706 pole coding downstream 14256 18700932 ~ 18718832 (-)
AMCG00018705 pes1,LOC106585655,LOC102794482,LOC101476782 coding downstream 49492 18674789 ~ 18683596 (-)
AMCG00018704 NA coding downstream 69720 18661254 ~ 18663368 (-)
AMCG00018699 NA coding downstream 89939 18642499 ~ 18643149 (-)
AMCG00018707 gatc,LOC102777901 coding upstream 2585 18736405 ~ 18737332 (-)
AMCG00018713 LOC106585677,LOC105014449 coding upstream 16625 18750445 ~ 18776404 (-)
AMCG00018714 NA coding upstream 136114 18869934 ~ 18875616 (-)
AMCG00018718 NA coding upstream 190688 18924508 ~ 18936316 (-)
AMCG00018722 NA coding upstream 318118 19051938 ~ 19056035 (-)
G118101 NA non-coding downstream 73690 18652766 ~ 18659398 (-)
G118100 NA non-coding downstream 75554 18656465 ~ 18657534 (-)
G118010 NA non-coding downstream 418846 18313999 ~ 18314242 (-)
G118008 NA non-coding downstream 432981 18299848 ~ 18300107 (-)
G117994 NA non-coding downstream 671544 17981829 ~ 18061544 (-)
G118147 NA non-coding upstream 149239 18883059 ~ 18885984 (-)
G118223 NA non-coding upstream 444661 19178481 ~ 19178740 (-)
G118238 NA non-coding upstream 487477 19221297 ~ 19221632 (-)
G118239 NA non-coding upstream 490852 19224672 ~ 19227434 (-)
G118266 NA non-coding upstream 599488 19333308 ~ 19335777 (-)
AMCG00018687 NA other downstream 185720 18538418 ~ 18547368 (-)
G118075 NA other downstream 258843 18466368 ~ 18474245 (-)
G117899 NA other downstream 1129240 17603356 ~ 17603848 (-)
G117823 NA other downstream 1476817 17226090 ~ 17256271 (-)
G117784 NA other downstream 1723787 17008898 ~ 17009301 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other upstream 11314 18745134 ~ 18746820 (-)
AMCG00018715 ankrd13a other upstream 103934 18837754 ~ 18845144 (-)
AMCG00018723 NA other upstream 304737 19038557 ~ 19047717 (-)
AMCG00018742 wscd2,LOC106584983,LOC105898177 other upstream 733948 19467768 ~ 19498979 (-)
G118434 NA other upstream 1253854 19987674 ~ 19988168 (-)

Expression


Co-expression Network