G118475


Basic Information

Item Value
gene id G118475
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20076825 ~ 20077042 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU148460
CTTGTCTGAAGAGATTTTCTCAGAAGCCTCTGTTTCATCTTGCTCCTCCTCCTTGTCCGACGAAGACTCCTCCTCCTTCCCAGAagtctcctcttcctcctccccctcacTGTCTAACTCCAGGGGCCTTGCGTGGCGTCTCCTCACTGCAGACACGTCCCCGTCCTTTTTGGACACGTCTGAAGACAGGTCTGCGATGTCCCTGTCCCGCTCTGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148460 True 218 lncRNA 0.56 1 20076825 20077042

Neighbor

gene id symbol gene type direction distance location
AMCG00018765 NA coding downstream 26582 20036729 ~ 20050243 (-)
AMCG00018766 NA coding downstream 44318 19991333 ~ 20032507 (-)
AMCG00018760 NA coding downstream 119558 19923370 ~ 19957267 (-)
AMCG00018761 LOC106579932,LOC105014887 coding downstream 163553 19894850 ~ 19913272 (-)
AMCG00018756 NA coding downstream 204931 19864992 ~ 19871894 (-)
AMCG00018771 hpd,LOC107092762,LOC103375816,LOC101157460,LOC100693609,LOC103398068 coding upstream 10098 20087140 ~ 20094506 (-)
AMCG00018777 vps33a,LOC106585293 coding upstream 141335 20218377 ~ 20225057 (-)
AMCG00018780 NA coding upstream 152129 20229171 ~ 20279538 (-)
AMCG00018778 NA coding upstream 226722 20303764 ~ 20309717 (-)
AMCG00018779 rsrc2,LOC106585280 coding upstream 236143 20313185 ~ 20321631 (-)
G118474 NA non-coding downstream 2664 20073351 ~ 20074161 (-)
G118470 LOC107758578,LOC107746221,LOC107658592,LOC107689149,LOC107558115 non-coding downstream 17416 20058972 ~ 20059409 (-)
G118469 NA non-coding downstream 19280 20056479 ~ 20057545 (-)
G118466 NA non-coding downstream 41168 20033210 ~ 20035657 (-)
G118440 NA non-coding downstream 82466 19994143 ~ 19994359 (-)
G118476 NA non-coding upstream 234 20077276 ~ 20077892 (-)
G118478 NA non-coding upstream 2924 20079966 ~ 20080327 (-)
G118479 NA non-coding upstream 4346 20081388 ~ 20081663 (-)
G118502 NA non-coding upstream 39409 20116451 ~ 20124488 (-)
G118515 NA non-coding upstream 75685 20152727 ~ 20152987 (-)
G118434 NA other downstream 88657 19987674 ~ 19988168 (-)
AMCG00018742 wscd2,LOC106584983,LOC105898177 other downstream 577846 19467768 ~ 19498979 (-)
AMCG00018723 NA other downstream 1029108 19038557 ~ 19047717 (-)
AMCG00018715 ankrd13a other downstream 1231681 18837754 ~ 18845144 (-)
AMCG00018703 triap1,LOC106568193,LOC106564228 other downstream 1330005 18745134 ~ 18746820 (-)
G118477 NA other upstream 1046 20078088 ~ 20079882 (-)
AMCG00018788 LOC107579725 other upstream 361917 20438959 ~ 20458617 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other upstream 411893 20488935 ~ 20523819 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other upstream 526453 20603495 ~ 20606743 (-)
AMCG00018797 NA other upstream 567843 20644885 ~ 20678437 (-)

Expression


Co-expression Network