G118502


Basic Information

Item Value
gene id G118502
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20116451 ~ 20124488 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU148494
aacaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctttcactGATATTATAGTCTTTGTagttgaatatatttttggtgGTTCTAAACTTGCATCACAGTCCAGTaattttttgattttatttattttttacaaattataatatatatttcttaacacAATAGAAAGCTGTAGCTGTCAGCATTAACAAAGCACCCTAGGGACTGTACAGAAATAAcccaaaataaagttaaataaaaaggttttgtaCTGTCAGGAACCGACTTTGAAAGTCCTTTTGAGGCACCTTAGGCTTCTCTCGAGCAACATGAAGCCACATACCTGTGCACAAAGTGTCTCTGAAATCTGTCAAAgacgacgacaacaacaacaaaaaaacaggaaaaagtaATTCACATCATCAGAGTCCATCTACCGTTAACTATCAACCGTTAACTAATAAGTTTTCTCACACATGTGCAAAACTGTAGTGCTGTCTAATCCTTGGTATTATGTAATGCCTTTAAAATGGATTAAGATTTCCTCAAGAAAACAAACGAAACACGCAAACCGGTCAAGGAATCTGCTGTAGTCTTCATTTGTGTTGACAGTGCTAAATAAAAGCCACTGTGAAGCTATACAGCACCACACTGTCACAGAGTCCACAGTACCAGAAAACGACTGAAGGATTTCAGTGTTGTGCAGAGGTTCCACATAGCCACTCTACAACAACCCTTTCACTAGAGACAAAGGGCCAGATATGAACGGTGTAAAACGGAGATTATATGCAATCATGTCACCTACAGTTTCAATTATGCTGCTTCTGTGATTAGAGAATGTACATTGTGTTACatgctttgtttcattgttgtggttgttttttaatgggtGTATACAACTAAAAGTGGAATGTTCCCTATATAATGTGTCAAAACCAAAACTAATATTCAAAATCCAAAtatacagatacaaaaaaaaaaaaaaaaccctaacAGCTCAAGTAAATATCCAGTActgtaatggaaaacaaagtattgacattttatattaaagaaaataaaaatcctctGCAATTCTTAAGCCTAGCACCTATTATGAAACTATTATGACATATCCAGCATAGTAGTTTGTTCTCGTTAAATGTACTATTGGTGTTACTGTGGAGATAACCGCTATGATGAAATTCACTGGACGAAGATTCAACACTTCCACATCAGATACAAGCACCAGGACCGGTAATAGAATCCTCTACTAAAGATTTTCTTCCTCTGTGCCGGCAATACATTTTAACCAGGAATGCTAAATCGTAACAATAATTTCACATTGAGAAAAGTTACATTTAGGTTAaggttgttttagtttttttgctttgctaTTGCAGTTATGACCTGCATCATAATGCGTAGTATCATTTGAGATTTATCGCCAAAGCCTGGAAATGGCTCAATTGGAAACaaaatggtttttttttttaaataaataaaatatttaaaaaaatgtaataaaccatTTCTGCTACAGCATACGTATTACAATGGTTTACAAGttgagcaaattaaaaacaggacaCTTGtgtaaaagtacagaaaaaaagagCTTATCAATGTTTTGGTAACACAAGGCACGTGACGAAGCAGGACCTAGGCTACAAGCTACGGCCTTcacatgaagaaaaataaaaagctaaaaacATGACCTGTACCATTCATTAAATAGttattgtagttgttgttaaaataaggaaatcttactattaataataacaaatataataacaataatacagcaGCAGAAACATCGGTTATCTTGACATTTAGAAACAGTGCGTAGACCCTCCTGAGAAAACCAACCCTTTTCACAcagaccaaaccaaaacaaaaaagaaaataaaaaaagaaagaaaccaaacaaaagtgAACATTGAGAAGTCCTTTACAGGGTCGCCGTGGTGTGTTTCACAGGTGCAgttcttcagtgtttttgttgttgttttttgttgttggcgGGCCAGTCTGTCAGATGGTGATGTGGCAAGGGCTTGTGCCCGAAGAGGGTGAGGGGAGGTCGGGGCCGGGTTGCCCTTGGCCAGCAGGAGTGGATGTGCAGAGCAACGGGATCCTCAGAGACACACTCTCTGTGCGCCTCGCAGGGGGAGGGACAGGAACGAGCAGAAACACAGTCGACGCCTTAACTCTCCTCGAAGTCCTGCTGGGACAACTCTGTTTTTACTTTCTTGGAAGGTGGGGCCCCGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148494 True 2247 lncRNA 0.37 2 20116451 20124488

Neighbor

gene id symbol gene type direction distance location
AMCG00018771 hpd,LOC107092762,LOC103375816,LOC101157460,LOC100693609,LOC103398068 coding downstream 21945 20087140 ~ 20094506 (-)
AMCG00018765 NA coding downstream 66208 20036729 ~ 20050243 (-)
AMCG00018766 NA coding downstream 83944 19991333 ~ 20032507 (-)
AMCG00018760 NA coding downstream 159184 19923370 ~ 19957267 (-)
AMCG00018761 LOC106579932,LOC105014887 coding downstream 203179 19894850 ~ 19913272 (-)
AMCG00018777 vps33a,LOC106585293 coding upstream 93889 20218377 ~ 20225057 (-)
AMCG00018780 NA coding upstream 104683 20229171 ~ 20279538 (-)
AMCG00018778 NA coding upstream 179276 20303764 ~ 20309717 (-)
AMCG00018779 rsrc2,LOC106585280 coding upstream 188697 20313185 ~ 20321631 (-)
AMCG00018776 NA coding upstream 225088 20349576 ~ 20362936 (-)
G118479 NA non-coding downstream 34788 20081388 ~ 20081663 (-)
G118478 NA non-coding downstream 36124 20079966 ~ 20080327 (-)
G118476 NA non-coding downstream 38559 20077276 ~ 20077892 (-)
G118475 NA non-coding downstream 39409 20076825 ~ 20077042 (-)
G118474 NA non-coding downstream 42290 20073351 ~ 20074161 (-)
G118515 NA non-coding upstream 28239 20152727 ~ 20152987 (-)
G118518 NA non-coding upstream 43630 20168118 ~ 20168331 (-)
G118536 NA non-coding upstream 90282 20214770 ~ 20217179 (-)
G118692 NA non-coding upstream 358396 20482884 ~ 20485106 (-)
G118696 NA non-coding upstream 482340 20606828 ~ 20607086 (-)
G118477 NA other downstream 36569 20078088 ~ 20079882 (-)
G118434 NA other downstream 128283 19987674 ~ 19988168 (-)
AMCG00018742 wscd2,LOC106584983,LOC105898177 other downstream 617472 19467768 ~ 19498979 (-)
AMCG00018723 NA other downstream 1068734 19038557 ~ 19047717 (-)
AMCG00018715 ankrd13a other downstream 1271307 18837754 ~ 18845144 (-)
AMCG00018788 LOC107579725 other upstream 314471 20438959 ~ 20458617 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other upstream 364447 20488935 ~ 20523819 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other upstream 479007 20603495 ~ 20606743 (-)
AMCG00018797 NA other upstream 520397 20644885 ~ 20678437 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other upstream 559178 20683666 ~ 20689922 (-)

Expression


Co-expression Network