G118536


Basic Information

Item Value
gene id G118536
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20214770 ~ 20217179 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU148532
GGCTTTATTTTCCATTAGAAAAACCCATGGGTTTAAGTCTCTGGTAATCAATTTAATAGCTCCCGGCCACACCTATGCCATTAGTACTTGTTCTGACAGCGAGTATTACCCTGTATCCATCTGGAAGACGAGACCAATGTGGATTCATGCGCTCTGGTAGAAACTTTGCATTTGCTTCATTGGAGGGGACTTGGAATTAAACCGAGATGCCCATGTCAGCAGGTCAGCCCTGTAGACACCGCCTGGAGATGGAGCAGCGCCTGGGGAGAGAGCCCTTCACACTGCGCTTTCTCTGGGTCTTAAAGGAGCTGCTCAAATTTGTGCTGTTCAGTTACACCGTTTTGTTGGGAGCGTTGCTCTTAGCTGGATGGACTACGTACTTTATGGTTGCCAAATAAATAGTGTAATTATGATCCATAAAACACTACCAAATGTAAAAAGTAGTTGACCTTTTTGTTAatggttttgaaaaaatatgtacaaacgCATATATGCTAAAACAAAAGCTTTGTACATAACCAGTGTCAGGAATGTAATCAATTGAGCATAGCTGACTGGTTTATTtggattaaaatgtatatgtgccTTCATCGGTTTGTGCTTTGTTTCATGATTGAAAAGTTATGTTATTAACCACTGCAAATTTATCAACTACCGCTGACGGGTTTAAAATGTTGGGTGAATTCAGTTTGGTGAATAAATATGGCGACAAGTTGGAAGAAGTAATGGCTTTACAGTAGCACCCAAGTCTGTTATGGACGTATTAAGATGGACAGTCCGGAGGGGAGCACAGCTCGATATAATCCCTAGAAATAAAAAGCATctaaaaacaatagaaaattttattttaaatgcctaACAAGACTCCAATCTTTGAATAGGCTACATGCTTTATTTCAATACTCCttcaaaactgtgtgtgtgtatatatatatataaattgcaggtaatattttgttttactttaaaagtaatgtttaatgttttaacatttactttttatggtctttgattttaaaatatgttgtggacttttaattattttttaagaaaagtttACATCACGATTGACTTTTTTGAAAATCATGTTGTTTTCTGGCACAATTTGCAGTCTATGGGTCAActcatacattacatttgttgtCCCCAGTCCAGAATGAACGACTTATAATCTGCAGTAATATTTTCCATGTTTAGTGCGCTCTGTATTaaaaaactaatacattaaaTCTGTTGAGTTATTAtctaacttttttattatttagtatttccCTTTAATTCTGTACAAACTTGTGTCTGCCCTTACAAAAATGGCTTTTTCGTCCAAGAAcctgtgtttttagttttcgtAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148532 True 1352 lncRNA 0.36 2 20214770 20217179

Neighbor

gene id symbol gene type direction distance location
AMCG00018771 hpd,LOC107092762,LOC103375816,LOC101157460,LOC100693609,LOC103398068 coding downstream 120264 20087140 ~ 20094506 (-)
AMCG00018765 NA coding downstream 164527 20036729 ~ 20050243 (-)
AMCG00018766 NA coding downstream 182263 19991333 ~ 20032507 (-)
AMCG00018760 NA coding downstream 257503 19923370 ~ 19957267 (-)
AMCG00018761 LOC106579932,LOC105014887 coding downstream 301498 19894850 ~ 19913272 (-)
AMCG00018777 vps33a,LOC106585293 coding upstream 1198 20218377 ~ 20225057 (-)
AMCG00018780 NA coding upstream 11992 20229171 ~ 20279538 (-)
AMCG00018778 NA coding upstream 86585 20303764 ~ 20309717 (-)
AMCG00018779 rsrc2,LOC106585280 coding upstream 96006 20313185 ~ 20321631 (-)
AMCG00018776 NA coding upstream 132397 20349576 ~ 20362936 (-)
G118518 NA non-coding downstream 46439 20168118 ~ 20168331 (-)
G118515 NA non-coding downstream 61783 20152727 ~ 20152987 (-)
G118502 NA non-coding downstream 90282 20116451 ~ 20124488 (-)
G118479 NA non-coding downstream 133107 20081388 ~ 20081663 (-)
G118478 NA non-coding downstream 134443 20079966 ~ 20080327 (-)
G118692 NA non-coding upstream 265705 20482884 ~ 20485106 (-)
G118696 NA non-coding upstream 389649 20606828 ~ 20607086 (-)
G118715 NA non-coding upstream 462101 20679280 ~ 20679555 (-)
G118716 NA non-coding upstream 463431 20680610 ~ 20681038 (-)
G118717 NA non-coding upstream 463945 20681124 ~ 20681365 (-)
G118477 NA other downstream 134888 20078088 ~ 20079882 (-)
G118434 NA other downstream 226602 19987674 ~ 19988168 (-)
AMCG00018742 wscd2,LOC106584983,LOC105898177 other downstream 715791 19467768 ~ 19498979 (-)
AMCG00018723 NA other downstream 1167053 19038557 ~ 19047717 (-)
AMCG00018715 ankrd13a other downstream 1369626 18837754 ~ 18845144 (-)
AMCG00018788 LOC107579725 other upstream 221780 20438959 ~ 20458617 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other upstream 271756 20488935 ~ 20523819 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other upstream 386316 20603495 ~ 20606743 (-)
AMCG00018797 NA other upstream 427706 20644885 ~ 20678437 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other upstream 466487 20683666 ~ 20689922 (-)

Expression


Co-expression Network