G118608


Basic Information

Item Value
gene id G118608
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20438960 ~ 20443229 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU148629
acagatataaaaacatcttatttattaGACTTAAAATAGTCAAGAGGTAACTTATGCAGTCCACCACTACAATCTTCATTAGTCATACAGCACAGTATTACAATACAGAATCGAGTTATTTTACATTAGGAGTGTACAAGAATCTATCTTACATTATAAAACAGCGGTTTCTGAAAGCACAGTACAGGAATGAGGCCTGTATGTCACAAAAGGTCTATGTTTTGACTGTTGTCCATGTTCACACTGAGAGGGATACATCAACATCAAGGATGAACACAAATGTTTGTCTCAGAtgcagacagaaaaagaaagtaaaacacacacacatatacaggaAAAATTTTTTTTATACCAACATGCTGGTTTTCTCACAGGTAGTTTGGCAATCTATTAAGTTggtatacttattattattacattgacAATCAAGGCAAATGGCTTATTTTGCTGCACCCAGATTTGAGGACAATGTGACCCCGACTCTATAATTGCCTGAATAGCTAATCTGCCACTGACAACATCCCTAACCCTGTACAGTAAAGTGCTGGAGTAGCTGGAGAGTTGCGATTGCTTTGGGTTGTGTTAGTCAGCGCAGGGCTGATGGCTTATTTTCAGCTGACTATGTAAGAACCAGGATTGGTTCCCTTGCTAGTCCAGTCTCTccattattgtgtttgtattcataaaaaaaaaaaaaaaatccataaaaataacagcaatttCACAAAAAGAACCAAGCATAGGGGAGGTCACGCACGGCCTCCGGAGGAATCAGGGGTCCCGTACATCACAGAAACTGGCTCCGTGTGCACAGACATGCAGACAGGTATCCACGGCTAGTGAAAATACACATTACTTCTCTCCTGCAGCCCAAAGCCACTCTGGCCTTCTTCAATCCAGAAGAGCTGCTTAAACTGGTGAATGAACGGAGCAGAGAGAGCACACACGGTATTCACGGGCTGAGTCTCTGTGCCCTGACGCCGCCGCCAACTTCTTCTATTCTGCTGAGGCACGTATGCGCTGTTGAATAGTTTCACAGCATTCCAGTCCTTCCAGAGGAATAGACAATGGTGAAATGAAGGTCCAATTAGAGCACCTGTACTACGGCATTCCTTGTTTTTATGCCAGTTTATGAAACCAGAATAATGTAAAACACTAGCCACTAGTTAGTTTTACCTCTTTCTAGAGAGAAAGACAACATCcagattaatgtaaatatacaaacagGTTAAGTTCTGGAGCTATTTACAACAGGGCTGCAATCACCATACAAAGTCAACAggaaaaagaaataagaaaactaaatttgGTGGTCAGATATGCTACCGATATGTAGGCTGGTACAAAACGAAGGCCCAGACATATACAGAAGGCCATCATACGTTATTTGTAGTGTTCATTGGTTTGTATAAAATCTCCCTGTTAGTTTGAAGACATGAATCCCAGCAGTTAACCGCAGAAAGAGTCTGTACACTCAGATAGGAGCGATGGCTTCGGTGGGAGAGTATTAGAAGCACAGTATAGCAGGTTGTTAGATGTTCATACTGTGGCACTTGTACCTGATAAGAGTATCGGAAAAATAACATGAcacatcagattttttttttttttacaagttaTAGAAGTGTAAgcatacaacataaataaaaaaacaaaaccttacaaactgaaaatgtacagaTCATATTACTATACtaaggttttatttgttttgggggtggggtgggagagtatatatacaaagaagaagtaaatacaaactatttcACCACAATCCTTCTGAGAGGATAAACAATGTGAGAAAGGTACACAGTTCAGTTTTCAGTTGTACAATTTAACAAGGTCTGTTCATGGTGTGTGTTGGTAtacagatacatagatagacagCTAGAGAgatgtctgtctatctatctatctatatacactgCAGAGTTCTCCTCCGGAAGTTCAACCCAAGATGGTCATTAGGAGGGCGAAAGGCATCAGTATTGGTCAATAGGGGAAGCTGAAGCAAGACGTTTTTTTGTGACACCCAAAGACAGTTCCCGTAGTCTAGCACTATAAATGACACCAAATCAACTGCATACAATATCACCTCCAAGATCTTCAAATCAGAGCTGGAGATCAAAGTGCTAGAGTGATGATACAGCACCACGGCTTCACTCTCTGGGGAGGACCCTGTGTTGGATGTGTATAATGATGCATAGAAATAGAGGGGCACTCATTTCAGATATCAAAAAGGAACCCGAGTTTACAGTTCCTGGTTTGCAATGTTAACACCTGTGAAGAACAGTACTGTAGAGACTTTGGTTCATAGACCTTGTCACATCTCAGCCTTCTGAGGACACCTGACAAGTCCAGAGGAATGAGACACTATGAGTTCAGCTGTCTCTGGACAAGGCTTTATTCAGTGTAAAACAGCTCTCGTTTACTGCAATGGGGGCTGAGCAGGAAATGTTAAAACTAACATGCTATTCCAGGAAGTAATACTCGATgccacacagtgacacacagctgGGGGCTGGCAAACCCTTTCTGTTGCTATGTCACAATGAGAGGAGGGCTGGAGACTCGCTGTGTTATTTGCTTCCTGTTAAGTATTCTTCCCCACAGACTTGATCaacaattaacaaaaactattttctgggtaaaacaaaagtatgcagccagtaaagcacagtaatttggggggggggggctgcctTCTTAAACTCCCCTCTCTCACAATAGACAACAATAGCAAATGTGCTTGGTTTAACCTATCCTGAGATACAGCATGAGCCTATCAAACACACCTACTGTCTTTTACCTTCACCTACCTACTTTTAttgcttcttatttttataGAACAAAAAAGCATGcgtgtatatacattttctttttacaaatcTAGATGGGCCCATACAAATAAagctctcccttctctctctctcagaagtACCATGGAGCTCTCCAGATCTAGCTGGTCTGGGATGAGGTTGCGGAGATACAGTGTACGGATTGGAGCGGTATTAGCGTCTGCACAGCCCTCGGACTGCGCCGCACTGCCATTGTATACATTCACACAACAGGTCAAACCCCCTTCACCGATCACCAGTCAGCCACTGCTCCCCTACTCTTCCCCAGCAACCCACAGGGGAGCCACGAGTGTTCTCCTTCTACCTACATTTCTACTGCATATAGACTATGTTCAAACAAATCCCCTTGAAGGAAGGGCTTGCAggtttcaatgtttttcacTCTGTTGTTTTTAGTAATATACATCACATAGGCATGATATAGGGGACTGAAGTTAAAAGCACCTAGAGTATTCTCTCCTTAGTTTGTGATAAATGCTTATTAAATTCATACTCCCTGAAATTGCTTtgcaaaaacaatttaaaaaaaaatgcacattacaGATGCCACTATTAAAAGTTAGAGATATGTAGTTCTCAACTAAGTTTATCGGCAGGACGGGGCAGCTTGTtagtgaaattgtattattcctAAAATGATTGTATGGATTCCTATTATTTCTCCCCCATGAATATCTAGATATTATCcagtttttccattattttgaaatattctaATCATTaaatctcatatatatatatatatatatatatattaaaaacactaatgTCTTAAGTACtgaaataggaaaaacaaaaagcaaataacaAAGAAACTTAACATCTTTGGCTAcaggtttgctttttttaaccTGGTCATCAAAAATGCTAAAACCCTCTTAAGTAACATGACATAAAAATCTAGATCTGGTTTTAGTACGTTTATAAAACAGCACAGTATAGTCTCAGTCTTCTGTTTGCATAATGTTTTCTCACTCTCGTTGGCACAGCTGAAAGTCAGTTGTTTGCCGTTATCCATGTCTACTGTAAAGCTGTCTGTCATGAAATGGGTGGaacattttttataatgcaGGAACTAAACAAACGAGCAAAAGACATTCAAATacgtattttttttctccatccgTACAACAGAGGACAAAACCGAAATCGGTACCATATGAAATATTCAGGCAAAATGCTTCACTCAACAGCAAATACTCTTACTAAAATGCACACCACATTCAGCCCTAGATAGCCAGAAAGGAGCAGAAATagaatttattttggttttcttttttaagcgAATTAAATGTTaggaaaaaaactcaaaatataTACCTccctctgtttttttaatatataaaaaaaggtttccGACTCAACTAAGAAATTCacgtttttgttgtgtttgctgTTGCTATTAAAATATT

Function

NR:

description
PREDICTED: neurabin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148629 True 4270 lncRNA 0.39 1 20438960 20443229

Neighbor

gene id symbol gene type direction distance location
AMCG00018783 NA coding upstream 5305 20408073 ~ 20433655 (+)
AMCG00018784 NA coding upstream 40623 20383129 ~ 20398337 (+)
AMCG00018775 NA coding upstream 90018 20322418 ~ 20348942 (+)
AMCG00018774 NA coding upstream 126404 20311158 ~ 20312556 (+)
AMCG00018772 NA coding upstream 231506 20202428 ~ 20207454 (+)
AMCG00018789 NA coding downstream 14736 20457965 ~ 20463349 (+)
AMCG00018782 arl6ip4 coding downstream 33897 20477126 ~ 20484929 (+)
AMCG00018793 kmt5a coding downstream 187774 20631003 ~ 20637704 (+)
AMCG00018791 snrnp35,LOC102792111 coding downstream 199100 20642329 ~ 20645241 (+)
AMCG00018799 tmed2,LOC105026094,LOC108425203 coding downstream 227607 20670836 ~ 20678821 (+)
G118601 NA non-coding upstream 57518 20377288 ~ 20381442 (+)
G118572 NA non-coding upstream 136002 20302670 ~ 20302958 (+)
G118566 NA non-coding upstream 139130 20279288 ~ 20299830 (+)
G118410 NA non-coding upstream 444631 19994126 ~ 19994329 (+)
G118304 NA non-coding upstream 859929 19576964 ~ 19579031 (+)
G118618 NA non-coding downstream 47632 20490861 ~ 20491106 (+)
G118620 NA non-coding downstream 56445 20499674 ~ 20500210 (+)
G118621 LOC107554528,LOC107654556 non-coding downstream 57721 20500950 ~ 20501433 (+)
G118622 NA non-coding downstream 60887 20504116 ~ 20504507 (+)
G118624 pitpnm2 non-coding downstream 74030 20517259 ~ 20517494 (+)
AMCG00018781 denr other upstream 64148 20372219 ~ 20374812 (+)
G118557 NA other upstream 178020 20259377 ~ 20260940 (+)
AMCG00018762 NA other upstream 464230 19971139 ~ 19974730 (+)
AMCG00018740 NA other upstream 956868 19373472 ~ 19482092 (+)
AMCG00018732 NA other upstream 1204609 19223168 ~ 19234351 (+)
G118623 NA other downstream 70931 20514160 ~ 20514491 (+)
G118635 NA other downstream 149507 20592736 ~ 20593016 (+)
G118636 NA other downstream 150137 20593366 ~ 20594139 (+)
AMCG00018792 LOC106928543 other downstream 158727 20601956 ~ 20603315 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other downstream 236051 20679280 ~ 20695194 (+)

Expression


Co-expression Network