G118630


Basic Information

Item Value
gene id G118630
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20585628 ~ 20590502 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU148651
CGCCGATATGCACGGTGGGGAATGTGGCTCTGTGTCGCAGACTCCCTGAAGtcacagaaacagacatttcAATCTGGTCCAGCCTGACCCCGAGTAACCCCTCCGTCTCGGCTACATTCAAGTGCTGGTTTCCTAGCAACCAGCACATGTCACATTCATGTCGCGAAAACGGGCGAAAACGGGCGAAGCGGCGGCGGACTCACCCAGCAGCGCCGCGTCCGTCCTCTGCCTCCAACGTGTAGCTATAATCCTCGTATCCCGCCAAGGCAGCGCAGTATCGATCTacgacattcaaacaatacagtacaaatgtgCTGAAAACGGGGAAAGACTCCAAATGTAACCCGCCCTCCGCCCTTCTGTCGCTTTCCGTCGTTTAATGTGGACTACAGATATGTAGGAAGGAAGAATAATTCAGTATGGGACTTACAGCATTGGAGTACTCGCTTTCACCTAAAAACGGCCAAAATTGCTCTGGCCTTCAGCATTGTTGCACTAGTCAGAATAACTGTAGTAGCAGGGGGTCACATTGTACAGCAGACGAGCAGCTAAAGAAGCCATGGACGTCCTTGACTTTCTAGATATCCCCGTGTTGTCAGTTTCACAGATTGCCGTGCTGCCCGGTCTGTCTGTACAGAGCGACACTGTCAGGATGTCgctagtttgtttttttgtgtgtgttttttttcttcttctgCACAGTGAGTGTGTCGAAGTGCACTCTTACCTGCTGCTTCTCTTGCGTGAGCTCGTCAAAGAGCCGCTCAGTGTCGGCCAGCGACTCCAGCCGGGCCTGGTAAGTGAGCTGTGATTCGTAGGGGGACAGCAGCTCAGCCCCGCAGccctcggcctcctcctccCAGGCCGGCCGACCGCTCACGGCTCCCTGCCTCACGGCCCGCATCGCCGACTCTGTACGGCTATCAAGTCTGAGTCCAGAGTTACTTGGATGATGACTTACTATAAAAATATCGGCAGTCCAACACATGCATCAATCTATGtcatacttaaaaaacaaaacatttaaaagacattGAAAATTTAATTCAACAGAAACAACAAGCACCCTGAAGTTAAATTCAATTGCAACAACCTCCACCCACCCCCTTACTTGCCAATCGATTCTGGTGTTTTAAGCTACAGCAAACATATCAGAAAAAAAGCTCTACAGTTCTTTGCAGCCGTGACAGAATGTTTAAGACATGTTTTGCAGGATCGTTAAACTCTTATTTACCTCCGGATTCATCCAGTGACATAAACTGGAGTCTCTTCCTGGGACTGGAGCTGCGAGATGGGGAAGCAGATGCATGAGCATCTTCATCTATTTGTACGTCAAACCTGAGTCACGTGAAGCAGAGCAAAGCAGAAAAAGCACAGCCATGATCACTGGAGCACAAGCCACTCAGCAGACAATAAGGACATCAGGCTTGGGGTTCATGTAAAGTATTACTTACCAATGAATTAACACCACCCAACCACCCATATACCCAAGTACAATCAAAATCATTCCTTCATTTCATCCAAGTGTTTTATCCCCCCTCCTTCCGATATCCTACTAAacaatttgattttctttgctCTAATTACAAAGAACCAGATTCAATTATGTTACAGTGGCAATTATCATACCATTGACTAAGGAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148651 True 1645 lncRNA 0.48 2 20585628 20590502

Neighbor

gene id symbol gene type direction distance location
AMCG00018782 arl6ip4 coding upstream 100699 20477126 ~ 20484929 (+)
AMCG00018789 NA coding upstream 122279 20457965 ~ 20463349 (+)
AMCG00018783 NA coding upstream 151973 20408073 ~ 20433655 (+)
AMCG00018784 NA coding upstream 187291 20383129 ~ 20398337 (+)
AMCG00018775 NA coding upstream 236686 20322418 ~ 20348942 (+)
AMCG00018793 kmt5a coding downstream 40501 20631003 ~ 20637704 (+)
AMCG00018791 snrnp35,LOC102792111 coding downstream 51827 20642329 ~ 20645241 (+)
AMCG00018799 tmed2,LOC105026094,LOC108425203 coding downstream 80334 20670836 ~ 20678821 (+)
AMCG00018804 NA coding downstream 105180 20695682 ~ 20697892 (+)
AMCG00018803 NA coding downstream 107720 20698222 ~ 20705953 (+)
G118626 NA non-coding upstream 9621 20536734 ~ 20576007 (+)
G118625 pitpnm2 non-coding upstream 61907 20523438 ~ 20523721 (+)
G118624 pitpnm2 non-coding upstream 68134 20517259 ~ 20517494 (+)
G118622 NA non-coding upstream 81121 20504116 ~ 20504507 (+)
G118621 LOC107554528,LOC107654556 non-coding upstream 84195 20500950 ~ 20501433 (+)
G118633 NA non-coding downstream 61 20590563 ~ 20591175 (+)
G118631 NA non-coding downstream 691 20591193 ~ 20591550 (+)
G118632 NA non-coding downstream 1183 20591685 ~ 20591925 (+)
G118634 NA non-coding downstream 1573 20592075 ~ 20592422 (+)
G118637 NA non-coding downstream 4671 20595173 ~ 20595580 (+)
G118623 NA other upstream 71137 20514160 ~ 20514491 (+)
AMCG00018781 denr other upstream 210816 20372219 ~ 20374812 (+)
G118557 NA other upstream 324688 20259377 ~ 20260940 (+)
AMCG00018762 NA other upstream 610898 19971139 ~ 19974730 (+)
AMCG00018740 NA other upstream 1103536 19373472 ~ 19482092 (+)
G118635 NA other downstream 2234 20592736 ~ 20593016 (+)
G118636 NA other downstream 2864 20593366 ~ 20594139 (+)
AMCG00018792 LOC106928543 other downstream 11454 20601956 ~ 20603315 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other downstream 88778 20679280 ~ 20695194 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other downstream 133108 20723610 ~ 20772586 (+)

Expression


Co-expression Network