G118771


Basic Information

Item Value
gene id G118771
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20922368 ~ 20931404 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU148823
CCCAGTTAATGGCAataagcttttttatttaaacattaaggcAGTGTTTTTTACACTGCTATCCACAATGCTTGCTGGTGGGCATGTTGAGTAAAACAGTGAACAAATTCCTCTGTAGAAGAAAACCAACCTTGCAGCAAGccacataaatatttacatctcTTCAGTTCTATATACAATCCTTTCTATTATACACTGGGTTCGAAAAAAATCATTATGCACAATATGTTTgtacaaaatatagtttttttgtttttttttttaccccttgTACATTTGAGACAACATATTGGCCTTTCAcgttacttttcattttaaattacacaagaAATAACACGACCATCTCTTGTTATGCTATTGACGTGAAAATGTTCTCCTGGTTGCACGGTCGGTCATTTGAAGTCAAAGCAGatagcacagaaaaaaaaaagacattccactaaagaaattaacaaaaaagcagacactttattaacataaaagctttttctgtttgttttgtaagtgtTAAAACTTGAAAAGTCCTGATGTTTGCAAGTCCTGGCTATTTTCACTATGAGCCTTTCTTTTTGTCTACAGTCACAGGTGTTTTGGGAATCTAACTTGGCAGGCACAGGTGTATTAAGACAAAAAGGAAACTGTACTGACAGTACAGATGCGATTGTACACAGGACAGGCCTCAGAGGAACGCTGTCGGACTTTTCTTTAACAGTGTCCTCTCCcagataaacaataaaaaacatgtatttccaaTGTTGGCTTTCTTGATTGAAAATGCaagattgaagaaaaaataagaagcaGTCCTGACGGTCTCTGTATTTCCTGTTGTTGCTGCTTGAGCATCCCACGACACGAACACTAACAAATTAGCAAGCTGTCCTAATTGCAGATCATTGTTCCTAACACTGAGCTCTGTCGTCTCGAGCTGCAGGTCTCTAGCACTACAGTCGATCGCTGCAGGAGATGTCTCCAAACAATCTCCGAAGGGAAAAATAAAGTCTAAAACAGGAGGtttgatcaaaaacaaaacaaatacatctggTATTACATTTAGTGAGTAGCAGCACAGGATTTAAAAATGACTCCAGCTGTGCAGATACCAACACTGGTAAcatagtaaagaaaaaaaaaagaaaaaaaaaaaagaaaaaaaaaccccaCTGGAAACAGTCAAGAACAAATCCGATCCTCTCCTTCCCTCAACAGGGGGCAGTTGTGGATAGGGGATAAAGGAGGTTCAGTGATGCAGGCCCGTCATTCCCATTGAGACACAAATCGGACAGGCCGGGCTTCTCCTGCAGCTCACATTGTGTGTAGATGAAAAGAGTAACGAAAAACTTCAAGGAAGGACATTTGAGAGGGTCACAATGGGCGTTTGGTGCAGTCTGACACATACGCACGatcctacatttaaaaaagagagatgtacacaatacaaaaatgaaaacaagtgtgCAGGAGTGTCAATACTGTCTCTTCACAAAAGGGGAGAGAAAGCAAAGTCCGTCAGAGGAATAAGAACTTCAGAGGTGAGTGTCAATGCTCAGATTTGCAGACGGATGACTGGAGCCCAAGGACAGAGGGCGCGGTTCGTCCCCTGAAAGCTGTGCAGGATCTCTGCCGAAGCACCTGCTCAGCTCCCGCCTGGCCTCCCCGTTTACACACGAGCACACACACATCGACCACGAGGAGCGGACATCAAGAGTATTGTCAAAACGTCGGCtttaataaagtatttacaTGATACAAACGGGAAGTGTAAACAGTACATGGTTCTGTGGGCTTTgtcccttttttatttcaattttaaagccAGAACGATTTAGCGGTTAATCTTCCAAACGGCTCAAGGACTCTTTAGAGTTTGGCAACGTACAATACAGTAAGTACATCAAATGGTACTGTTGCTATTTTACTGCTGAAAATAGGTCAGTTTAAGGACCCAAGTGAATTTATGCTGCAATTCAGGAAgggctacagtacagtaactgcCCTCTGTTGCTTCTTTTCCAGCTAtaaatttaaaatccttttaaaaatagGGATGCTGCACTgcgtatttatatatatatatatcctaaacATGTACACCTTGGCATTTCAAACACTTGTGCGTAGTCACCTTGTAACTTCAGTACtgtatacttaaaataaatggcacTTTAACACTagaaatatttaagaaatgtacaaataGAAGAAAACGAATAAAACGACACACCCTCCCCCCAACCTATACACACAGCTCACCTCCACACAGTCCTGCTAGTCACCCTAACACACATGATTTAATCCAAGTTGGAGAACGTGTGAAAAGAACCTGCAGTTTGTTATTCACACTGCCAACCAAGGGGTCTTATCTTTTCTACTATACACAGTCACAGCTTGGCAGTGGCCACAGTGTCAAACCCACTCAGGGGGCGTGGCGACCCCTACACAGCTTCCTGTGACCTCACACACTCAGTGCGTAGAATCTGTGGAAAACTAAAAATCGCTCCTTTGGAAATAAGCATTTTGATTCCTGTGTTCAATTCAATATCTCGTCACCAATCAATTTCTCCGTAGACATTTTCCACAGATCCGCAGCTCTGGGCTATCATGTGAGCAGCAACCAATACACAGTTATTGTCTCAGGTAACTAAAAACTCCTCTGAAACGCTGATTTCTGAAAGTGCTTTCTCTCTTGTGCAGTCAGGACTATACTGACTAGACTATACAGTCCTGGGCTGCAGCTGTACTTTCCTAAATCCCTGTATTTTATCATCTCTGCTGTAAGGATATGGATGAGAACCACAGCTGCACTAGGTGAGCtcccaaacatcttggaaaCTGAAAGAGGCAGTGAAGGTTTGTTGCCTGGGCTAATCAATTTTGTCAAGTGGTTTGGCTGCAGTTCGGAATGGCCATGCAGTGAACATGGGGCTTCGTCACgaaaaacaaatcagataaaaacactgattttcCCAAAGAAGCGATTGTGCACAGATTTCCGAGTAAGTGCTTGTTGTCCGAAAAAGCTTCAATACTGtcaatattcataataaaacagaacaaaaatatataaataaacgcTTTGTAGAAAATAACTACTTGATGATTATGGAACACCATTCGAAGTGTCCTCAATGATGTAATTTTGTTTCAGGCGGTCTATTAGAAGGGGCATATGATTTCAAAATGGTTTCATCCACCTTCAAACCTCTTCAGAACCATGATTACAACAGGGATGTTCATCCTATACTCTGTAAAGCAGGAATAAGAACCATTACAGTTTCTCCCAAGTGGATACAAGGTACCTTGCACAATCATGTGACTGCTCCACGCTTCAGTTTCTAAAATTGGAAAGCTCCCAAAATTTGTAACTCTTTTGCTCTGAATAAATTAACGATCTGTCCCTTGGGGAACACGACTGCTTGGGAAATGTAATTGCTCCAGCTAAAGTTACTGTGCAAAGCAATGGAAAGAGAACAAGATAACATGTACATTTGACTGTAGTGCCTAGAAGATGAATGCTCTTCCCAGAATGCTTTAGTGTCGCCCGCATGCCTCCCTACACCTGTCCTGAGtcggaggagagaggagggagacaTGGGAGGTCTCACCGAAACACTCCATCAATTCCCATCGTCCAACAACCAGCGAACCCGAACAGAGAGAGGGCAGCAAGGCTGAGGACACTGCGGCGAAACTCGAGAGAAGTGCTGTGAGTGGATACTTCAGAATGTACTCGACTTTGCATTACTGTGCATATCAACAACTGTCCCGTCTGTTCTCCTGTCATAGGAACCAAGCACTCTCAGACCAAATGACAATTTaacgtttttcttttcaaagggATAAGGACCGAGCATTGCCTCAGTGAGCAGACATCTACAATCTATccatctatttatatatatatatacatatatacacacacacacacacacattcatacatacatatatgtatatataaatagacagatgtatgtatattcatttatatataatctttgCTATTTTTTCATATACTCTTAAAACTTGATCAGCCTTCACGTGCGGTAAcctaattataaaaaaacaaaaaacaaaacaaaaaagtagatACATCTGACCAAGACTCTACAGCAGAAAAATAAGTCAAATCAGTGTGTTCAAAAGGCTTcaattgttttctctgtttctaACCAACTTGGCTCCTCCGGCAACGCTTTTTACAACCGGAATCCTTTCATAACGTTCTCGACTGAGAGTCCTTTCAGGTCCTATTCACAGCCGATGAGACGGTACAAAAAAACTAATCGACggaaacaaaaagagaaaaaggaaatgttgaaatgcaaatgtggtATGTTTCCCCATTATAAGGCCCGTAAGCGAAAAAAGAGAACTGAaactctctctcccacccccaTTCCCCAGGTGATGTCAGGGTGCGCTGGGGGGGGCGCACAGCAGCAGCGATCCTGCAAAAACGGAAACTAGTGATCCCCAGGTCAAAGTTCAAAGGTCGTTTTTGGGGACTCGTGCTCTGCCACATCAGAGCTCTGTCAGTGTTCAGCAGCTCGGTGCACAGCAGCAGTAGGAGGGAGGATGgggagaaagtgtgtgtgtgtggggggggggggggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148823 True 4615 lncRNA 0.41 3 20922368 20931404

Neighbor

gene id symbol gene type direction distance location
AMCG00018806 rflna,LOC106585519 coding upstream 10291 20896914 ~ 20912077 (+)
AMCG00018801 atp6v0a2,LOC106580324,LOC106584979 coding upstream 199254 20706497 ~ 20723114 (+)
AMCG00018803 NA coding upstream 216415 20698222 ~ 20705953 (+)
AMCG00018804 NA coding upstream 224476 20695682 ~ 20697892 (+)
AMCG00018799 tmed2,LOC105026094,LOC108425203 coding upstream 243547 20670836 ~ 20678821 (+)
AMCG00018823 NA coding downstream 759907 21691311 ~ 21692108 (+)
AMCG00018821 NA coding downstream 784446 21715850 ~ 21743739 (+)
AMCG00018826 NA coding downstream 1098796 22030200 ~ 22036605 (+)
AMCG00018825 NA coding downstream 1115898 22047302 ~ 22074621 (+)
AMCG00018828 NA coding downstream 1159299 22090703 ~ 22091323 (+)
G118644 NA non-coding upstream 301821 20607648 ~ 20620547 (+)
G118645 NA non-coding upstream 316271 20604704 ~ 20606097 (+)
G118641 NA non-coding upstream 322012 20599791 ~ 20600356 (+)
G118640 NA non-coding upstream 324250 20597875 ~ 20598118 (+)
G118639 NA non-coding upstream 324761 20597101 ~ 20597607 (+)
G118863 NA non-coding downstream 439506 21370910 ~ 21422770 (+)
G118885 NA non-coding downstream 749916 21681320 ~ 21681723 (+)
G118999 NA non-coding downstream 1615868 22547272 ~ 22547691 (+)
G119005 NA non-coding downstream 1626809 22558213 ~ 22558419 (+)
G119006 NA non-coding downstream 1629658 22561062 ~ 22561280 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 149782 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 227174 20679280 ~ 20695194 (+)
AMCG00018792 LOC106928543 other upstream 319053 20601956 ~ 20603315 (+)
G118636 NA other upstream 328229 20593366 ~ 20594139 (+)
G118635 NA other upstream 329352 20592736 ~ 20593016 (+)
G118815 NA other downstream 256552 21187956 ~ 21189246 (+)
AMCG00018820 NA other downstream 916966 21848370 ~ 21897700 (+)
G119507 NA other downstream 4302678 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 4534687 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 4747273 25678677 ~ 25718426 (+)

Expression


Co-expression Network