G118936


Basic Information

Item Value
gene id G118936
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22080464 ~ 22113695 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU149076
TTGCTGACGGACAAGATGTAAAAGTGTAGATTCAGAACCAAACCAGGTGATCTTTGCTCTTGTCATTTATCGATCAAGGAGCTGCGCAACTGGTTTTAATATCGGTTCGGTAAGAGGGGCGTATTTTTAATACTTGGATTATCGATATGAAAGTACTCTTTCTGGCTTGTCTCAGTCCAAAAACCGGTAATTGTACAACCGCAGAAAGAATCAGAGAGCACATTGAAGCAGCAGGTCACGCCTGTGTTCTTCGAGATGCGGCCGATTTCAAGTGTCCAGCTGAGGTGGCTGTGCTGGAGGCGAGGGAGGCGTGCTTCCAGGGGGCACTGGCCATTCACCTTTATAAAGCGGGCAGACTGCTGCTAGATACCCAGACTCCTTTCGGCGTTGTCTTTGGGGGGACAGACATTAATGAAGATGTGAGAGATGAAACTAAGCGAGCAGTCATGGGGAAGGTGCTGAAGAAAGCAAGGTTTGCTGTGGCATTCTCCCAAAAACTGAAAGAGCAGGCTGAAGCCTACTGgGGATTGAGACTGAAGCTACAGAAAACTTAAACTGGCGAGACTTTCTGCGAAGCACAGGTGTGAGCTGCAAGAATGTAGAAGATCTGCACGTTTTTCTCTTGGTGTGTGGACTGAGACGAGTGAAAGACCCTCTGTATCTGGTCGATGCATTTTCAGAATGGCATATAGAGGACCCATCGGTAATCCTGATCATCATTGGTCCAGAGATCGATCCTCTGTTTACAGGAGAAGTGGAAGCGAATGTTAAAAGAGCAAAAGGAGTATTCCTGGCTTCTGAGAGAAGACAGCAGGAGCTCCATGCAGCCATGAGGAGATCCTTCGCCTTGGTCAACAGTTCTGTCTCTGAAGGGATGTCAGCCGCCATTCTGGAGGCGATGGACTTGGAGCTGCCGGTCGTGGCGAGGGACATCCCAGGGAACGCGGAAATCGTTAAACACGAAGACACGGGACTGCTCTTTTCAAACCCACAGGAGTTTGTCGAACTGTCCAAGAGATTGCTGGTCAATCCAGCATTGCGTGAGAAGCTGGTGTCAAACGGGAGGAGGTACGTGAAGGAGCTGCACTGTAAAGGTAGGGAGAGACTCACCTACCACCAGCTGCTCCAACACCTACACTGACACCCGGCGCAGCTTCCCAGAGACCCACCTGGACTCGTCCCATCCCACACGGAGGCACAAGAGCCAAGAGCAACCAGGGCCACGCCGGAACGGGAAATTAAAATACCAGCAAAACAACAGATTGTTAGGTTTTCTATTGTACGTGATGTTtttactgaaaagaaaaaaaaacattttaaggatcattttactatttaaatgtttttgagttgttgttgttgttgtttttgttatccACAGCAGGTTTCTATTAAACCTTAAACCGTTCAGAGATTTGAAAGTTAATTGTATTGCTGCTGGagtcagattgttttgttttgcacttcagggaaATGCAGTGTTTCACTTGACTAGGCCGGGAATGAACGCTGTTGCAACAAGACCTAACCTTTTGCTGTATTCTGaagacaaaatatatgtatatagatttaCAAAAAATGGTTACAAGCAGGCGGTTATTTGAAAGGCAATGATGAGTGAAATTGTAAAGCAAGTCACTGAAGTTAAAATTTGTTCCCTTTTTCATAATCTTtcgtagttttttttttctttttctttgaaagtCACGTGGCTGGCATTgtgaagtttaaaaatatgttcgGGAAATGCTGCTAAGGCAGTGCTTGCTTAAAATCTGGTATTTCAACTGTATCTTTAAAttgttgaaatgtaattttctacTTTATATTTAAGATAAATACTCGGTATTTAGATTAATACTCGGTGTACACAGAGTTTAGCATCATGGTGGTAATGTTTTTTGTCctgaatatacatttatttttggtacaCAGGTATTTTCATACAACATGCTTTCTGTAATGAAGTAGATTTGTTAGCTGTTATGTTTGGGtttatttaaatggtatttAACAGAAttgcaaagtacagaaaatatCTGTAATACCAGTGGTATTAAATGATAATCTCTCAGGTTCAATCAAGTTCATTTTATATCTGAATGATCTCACTTTCATTTGACctgtcatgtgtttgtttttgttgtattattatttattttgatatgcaCCATATGATTTCTTTAGAAAAACAGTGCGATGTTTCTGGATTCACTTGTTTAATTTAGACCGATGATTAAAAGCTTTCGTCTGTCATTATTTGTAATTCTGGcagttggagagagagagaatcgaaaaggaaaatcaaacagCAGCAGTGTATCCCAGAAAGACCTATGCACTGCAGACGCCAGCTCAAAGAATTACAACATTTTCATCCGTCTTACAAGTAGTAATACTAGCTATATGTAGTGCTATTGCTGAACAAGCACAAAGAATGCTTTCTGAAAGCCAGATGTCTTATTGCTGATTAAGACCaaacctttaaaaaacacacaattcagTGACATGTTATAATAGTTATATCAATTg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149076 True 2532 TUCP 0.41 11 22080464 22113695

Neighbor

gene id symbol gene type direction distance location
AMCG00018824 fzd10,LOC108441898,LOC103024082,LOC107669258,LOC107659609,LOC107574912 coding downstream 125516 21953234 ~ 21954948 (-)
AMCG00018822 NA coding downstream 170975 21897806 ~ 21909489 (-)
AMCG00018818 LOC107665254 coding downstream 405268 21672274 ~ 21675196 (-)
AMCG00018817 NA coding downstream 413780 21648834 ~ 21666684 (-)
AMCG00018814 adgrd1 coding downstream 456913 21611950 ~ 21623551 (-)
AMCG00018830 NA coding upstream 63263 22176958 ~ 22223700 (-)
AMCG00018831 NA coding upstream 178286 22291981 ~ 22292847 (-)
AMCG00018835 med15 coding upstream 309711 22423406 ~ 22438354 (-)
AMCG00018840 NA coding upstream 367444 22481139 ~ 22487712 (-)
AMCG00018839 NA coding upstream 384324 22498019 ~ 22537319 (-)
G118892 NA non-coding downstream 361661 21703302 ~ 21718803 (-)
G118889 NA non-coding downstream 378416 21694983 ~ 21702048 (-)
G118886 NA non-coding downstream 398907 21681333 ~ 21681557 (-)
G118881 adgrd1,LOC107659615,LOC107726205,LOC107684517,LOC107553828 non-coding downstream 463971 21594994 ~ 21616493 (-)
G118870 NA non-coding downstream 513211 21567009 ~ 21567253 (-)
G118947 NA non-coding upstream 37659 22151354 ~ 22153714 (-)
G119048 NA non-coding upstream 513850 22627545 ~ 22630125 (-)
G119070 NA non-coding upstream 550138 22663833 ~ 22664099 (-)
G119072 NA non-coding upstream 553234 22666929 ~ 22667210 (-)
G119128 NA non-coding upstream 648665 22762360 ~ 22766026 (-)
G118727 NA other downstream 1382637 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 1390542 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 1402027 20644885 ~ 20678437 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other downstream 1473721 20603495 ~ 20606743 (-)
AMCG00018790 LOC101483632,LOC102787753,LOC106585272,LOC107722332,LOC107554528 other downstream 1556645 20488935 ~ 20523819 (-)
G119144 NA other upstream 690650 22804345 ~ 22806338 (-)
AMCG00018898 NA other upstream 2961703 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 3021076 25134771 ~ 25171644 (-)
G119545 NA other upstream 3072512 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 4338029 26451724 ~ 26485315 (-)

Expression


Co-expression Network