G119009 (cabin1)


Basic Information

Item Value
gene id G119009
gene name cabin1
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22565358 ~ 22565611 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU149158
ACCTCCGAGGGCAGCTCAGTCTTGAACTGCTTGAGCTGCCGTGATGCGAAGGAGTGCAGCGCGTAGGACATAGTGCCGTACTCGATCCACAGAGACAGATTGGAGCCATCGATCTCCAGAGCGCGCTTGAAGCAGTTGAGCACTGACATGGAGTGTTTCCAGATGGGACCGTCACTCTTCAGCTcattggagttcagcttgtccTGGATGCGGCTGGCTCTGGCTAGAGCCATGCCGGCCCAGGAATCAAACCT

Function

symbol description
cabin1 Predicted to contribute to nucleosome binding activity. Predicted to be involved in DNA replication-independent nucleosome assembly. Predicted to be active in nucleus. Is expressed in integument; nervous system; optic cup; and pharyngeal arch. Human ortholog(s) of this gene implicated in ovarian carcinoma. Orthologous to human CABIN1 (calcineurin binding protein 1).

NR:

description
PREDICTED: calcineurin-binding protein cabin-1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149158 True 254 lncRNA 0.57 1 22565358 22565611

Neighbor

gene id symbol gene type direction distance location
AMCG00018832 crkl,LOC106566436,LOC106563168 coding upstream 104941 22455239 ~ 22460417 (+)
AMCG00018833 NA coding upstream 116029 22440803 ~ 22449329 (+)
AMCG00018834 NA coding upstream 142544 22401501 ~ 22422814 (+)
AMCG00018827 NA coding upstream 427065 22115610 ~ 22138293 (+)
AMCG00018829 NA coding upstream 473740 22091346 ~ 22091618 (+)
AMCG00018836 NA coding downstream 38740 22604351 ~ 22627498 (+)
AMCG00018838 derl3,derl2,LOC107667536,LOC107602852,LOC105014174 coding downstream 64934 22630545 ~ 22636051 (+)
AMCG00018837 NA coding downstream 85528 22651139 ~ 22659793 (+)
AMCG00018847 NA coding downstream 119266 22684877 ~ 22692816 (+)
AMCG00018845 NA coding downstream 146081 22711692 ~ 22719425 (+)
G119008 NA non-coding upstream 651 22564370 ~ 22564707 (+)
G119007 NA non-coding upstream 2548 22562552 ~ 22562810 (+)
G119006 NA non-coding upstream 4078 22561062 ~ 22561280 (+)
G119005 NA non-coding upstream 6939 22558213 ~ 22558419 (+)
G118999 NA non-coding upstream 17667 22547272 ~ 22547691 (+)
G119010 NA non-coding downstream 2155 22567766 ~ 22567980 (+)
G119013 NA non-coding downstream 9848 22575459 ~ 22575690 (+)
G119014 NA non-coding downstream 11111 22576722 ~ 22576960 (+)
G119015 LOC106927871,LOC103148411 non-coding downstream 11890 22577501 ~ 22577713 (+)
G119016 NA non-coding downstream 13440 22579051 ~ 22579336 (+)
AMCG00018820 NA other upstream 667658 21848370 ~ 21897700 (+)
G118815 NA other upstream 1376112 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 1792772 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 1870164 20679280 ~ 20695194 (+)
AMCG00018792 LOC106928543 other upstream 1962043 20601956 ~ 20603315 (+)
G119507 NA other downstream 2668471 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 2900480 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 3113066 25678677 ~ 25718426 (+)
G119762 NA other downstream 3895009 26460620 ~ 26461227 (+)

Expression


Co-expression Network