G119048


Basic Information

Item Value
gene id G119048
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22627545 ~ 22630125 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU149209
GGAAATGTAACCTGATGAAGCCGCCTGAAGCGTGGCGCTCTGGGTACGCGGACCAATGGGACACCGGGGATGGATGGATGAGAGCTGAGAACGCTCAAGGCACACCTACTTCACTTTGCCTGGCACACCAACAACTCCTGCCCACACAGCTGCACACccttttaaaaacttgaaaataaatcttaagtTTCAGTGAGAAGCCTCTTGATGCAAAATACCCATTTCATTCTGTTAGAAACTTAATTTTGGTAaatgagaaatgtttatttctttatgattttagttttcttaccatcattgtaattattattattatttttttttggagtCTACCTCTCAGAATCTAAGAAAAGCTTAGATAAATGTACCTGATTGTTGTATTCTAAATCATGCATATACACACGTGGCCGAATgtattggtacccttgcattttattcaaataatgcaccatttgccctgaaaagtgttgaaattaaaatatcttttgtcatccatacatgcatgtcttgCATGCAtgtttgcagtggaacaaaacaaacaaactgtgaaaagaactgaattcttgcttattctTGCATTCtaagacattctaaaatggcctggacaatattattgataccctttagaagtcatatgaaatcattgtattgtagtgatacctcaagcagaccattctcttttaattagtatcacaggtgtcttcaatcacATTAACTCATTCAGGaagtttaaatggagaaaagtactcactctgctgttttgtgtcactgtgtgtatcacactgaacatggaaaagagaaggaaaatcagagagttgtctgaggacgttagaaagaaggtaatagccaagcatggtcctacaagaccatctctaaagagcttgatgttcctgttagcactgttgccaatattattaagaagtttaaggcccatgggactgtagccaacatccctggatgtgtccgcaagaggaaaattgaaacgagaatgaagagaaggattgttTTATCggtggagaaagaaccaaggaaaacctcaaaacagatgCAAGTCGATgttcaagctcaaggtgcaacagCTTCAAGTCGTACCATCTcccaaaatgcatgtggacgggccacagtccttctgggagaatgtcctttggacagacaaaacaaaagtagagctttttggtaaatcacaacaactccatgtttatagaaaaacaaaatgaagctttcaaagaaaaaaacaccatccctaccgtgaaacaCGAaggaggctcagtgatgttttggtgttgctttgctgcctctggcactgggtgccttgaatctgtgcagggcacgatGAACAcaaaagactatcaaggcattttggagcAAAACGTACAGTCCAGTGTCTCaaaagctgtgtctcagtcgcaggccatgggtcctccagcaggataatgacccgaaacatacctcaaaaagcacccaagaatggatgagaagaaaacattggactgttctgaagtgatcttctatgagtcctgatctaaatcccattgaacatctgtggaaagagctgtaactcgcagttgggaaaagggacccatcaaacctgagagaagtggagcagtttgctcaagaagagcgggccaaactaccagtcgagaagtgtagaaatctcattcagagctacagacagcgcTTGATTGCAATTAAAGgctgtgcaattaaatattaggttaagggtcccaatatttttgtccatgccattttcatttgttttactatttaaggTAATATGTTACGTcctaaatcaaaagcaaagtttcttttctattgaatgtgaaataaagaatggtggataccaaatacgtttgtcaatttctacttagttcagagaaaattgtgagtttttttattaaaagtggaagggtaccaatactttcggccaTGTCTATATGCAAATGCCTTCATGTTCTAGTCAAATTAATCCTGTGTCCTTTGACTTAGATTTACTCTTCTATTATCAATACATTGTAGATGTGTCTGCACTATTGCATctacatttaatgtgtttttctatttttgtgatCAGTTCTGAATAGGGTCTTTACCCACCTATCCCATTAATACTAATTTCAACATGCTGTAAGTAATCAGTTATCCTCtctccatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149209 True 2152 lncRNA 0.39 2 22627545 22630125

Neighbor

gene id symbol gene type direction distance location
AMCG00018843 NA coding downstream 37221 22588552 ~ 22590324 (-)
AMCG00018842 NA coding downstream 41509 22584167 ~ 22586036 (-)
AMCG00018841 NA coding downstream 44706 22561021 ~ 22582839 (-)
AMCG00018839 NA coding downstream 90226 22498019 ~ 22537319 (-)
AMCG00018840 NA coding downstream 139833 22481139 ~ 22487712 (-)
AMCG00018844 smarcb1,LOC107661349 coding upstream 7568 22637693 ~ 22645367 (-)
AMCG00018856 NA coding upstream 123842 22753967 ~ 22760428 (-)
AMCG00018861 NA coding upstream 137336 22767461 ~ 22768061 (-)
AMCG00018859 NA coding upstream 141311 22771436 ~ 22790973 (-)
AMCG00018860 NA coding upstream 179360 22809485 ~ 22821646 (-)
G118947 NA non-coding downstream 473831 22151354 ~ 22153714 (-)
G118892 NA non-coding downstream 908742 21703302 ~ 21718803 (-)
G118889 NA non-coding downstream 925497 21694983 ~ 21702048 (-)
G118886 NA non-coding downstream 945988 21681333 ~ 21681557 (-)
G118881 adgrd1,LOC107659615,LOC107726205,LOC107684517,LOC107553828 non-coding downstream 1011052 21594994 ~ 21616493 (-)
G119070 NA non-coding upstream 33708 22663833 ~ 22664099 (-)
G119072 NA non-coding upstream 36804 22666929 ~ 22667210 (-)
G119128 NA non-coding upstream 132235 22762360 ~ 22766026 (-)
G119129 NA non-coding upstream 204634 22834759 ~ 22857679 (-)
G119180 NA non-coding upstream 352741 22982866 ~ 22983566 (-)
G118936 NA other downstream 513850 22080464 ~ 22113695 (-)
G118727 NA other downstream 1929718 20696834 ~ 20697827 (-)
AMCG00018805 eif2b1,LOC106580370,LOC106585290 other downstream 1937623 20683666 ~ 20689922 (-)
AMCG00018797 NA other downstream 1949108 20644885 ~ 20678437 (-)
AMCG00018794 cdk2ap1,LOC105905088,LOC105026112,LOC108438487 other downstream 2020802 20603495 ~ 20606743 (-)
G119144 NA other upstream 174220 22804345 ~ 22806338 (-)
AMCG00018898 NA other upstream 2445273 25075398 ~ 25084586 (-)
G119538 LOC108444117,LOC105014832,LOC106563153 other upstream 2504646 25134771 ~ 25171644 (-)
G119545 NA other upstream 2556082 25186207 ~ 25187408 (-)
AMCG00018929 NA other upstream 3821599 26451724 ~ 26485315 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G150093 NA non-coding NC_053125.1 CM020922.1 38689703 ~ 38693199 (+)
striped catfish (Pangasianodon hypophthalmus) G171570 NA non-coding NC_047604.1 CM018550.1 25287152 ~ 25289502 (-)