G119354


Basic Information

Item Value
gene id G119354
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24537666 ~ 24599014 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU149585
cagcATATTCATATAATCTGTAGAGGATGGTTGCTATGCTCTGAGGGAATACAATTCCATAgcaacataaatacaaaagtgcCATTTAAGAAAGaattggagggggggggggtaaaattaaagaaattaaaacatacagtaaacattCATTCTTATCCAACAAAGGTGTTTTGGCAGTACTCTGTCCCCAGTAGTTTTGTCTGTTCATTGGGGTTTGTTCTTTTAAGTTCACCTAGCAATCCAGTTCTATTGGGTCACAATGAACGTTTCCAATTCCGTGTCCAGGTCCTTGCCATTCAGATTTCCTAGGCCAGAGATCCACAAGCATTTTTTTAGCACTATGATCTTGCCAATACAGCAAAGCATTGTCATTTTAAGATGTCTAGGATTACAATTGCACTTGCCAAAACatctaaaacacatttaaattgtttgcaaaaaataaaactttttttttttccaatgtagGGGTAGTATCAGCATTTCAGTTTCCAAATCTTTTCGTCACCCATAAAAACTGCTTGTGCATCTCCAGACTGAGGCAACATAGGTTGGGCTGGGTTCAGAACACAGGGTCACATTTCTGCAAACTCTTTCAATCCATTCAGTACTGCAAAATCATAAAAGGAGATGACAtgtcaaaggaaaataaaagcaagagagattgttttttgtgttttacgGACACATCTGTGAAGTCACGTTGCCATGACAAGTCCTGAGCTGATGTCATTTCTAGGTGGGttattaaaaacagtaattacaattaaaaactgaCACGCAAGGGGCTGAAGGAAACGGCGGGAGATGGAGGCACGTTACTTTGTGAAAACGTTTTTCTATTTCAAGACTGAAGGACGCTAAGAGGGCCCAGAGCAGCGAGGGGTCTCTCCTGCTGGAGTGTGGGACAGTGACGGAAAATGGGCTGGAAATCTGCactggaaatgcatttaattagcatttcctcattattgaaattgaaaggaAGATTCTTTACCACAACTCCCAGTTTGTGTTCATGTTCTTTTTTCCCCGACCACCCCCATCATTCCACTCAATTGAGCATTCTCcaatcaagaaacaagaaagagaaaactgtACAAACACTGAGAATTTCTGATGCGTTCGTTATTCATTtaagggaaaaaactaaaaattcaTCTTTGTCCTCCAAAACATGCACTATCTTGTTATTACATTGCAAACCCACATCACAAACAGTAGCACTAAGATTGCCCAAACCCTTTGCTTTATAACACTGCAGGCTCACAGGCACTAGGTGATCCACATAGGTCTCTGTATAGTGTCACTAAACACTACTGTTTAGTAGTATTGCAGTATGTTACCTAAGGTGGAGCTGTTGGCTCATTGTTAGAGGGCATTGGGACTCTCTTGACTTGCCCTCTTGTTGTTGAGAATTCAGCTATCTGTCATGTTAAACTTAAATGCCAGACCAGGTAATTGCATAAAGAGCAAGTAGTGTTATTCTCCCCCCATGTGttgaataacattttgaagTAACATTTGTGCAATTCTGTCTGTCCACACTTAAGAAGATCAGTCCATCTCCCTCCCCTTTTGAAGAGTTCTCCTGTATTTTCAGCACAGGCAAAACTTGTGGCGACCTTCCCATTTTATGCCCTCTGATCCCTTCCAGTGGAAGAACGTAAACAAAAGCAGGAGTGCTTTGGCTTTTCTGTTCCCCATGTCATCATGGGCTTTTATTGCTGTTTGACCAGTTCAAGGATGTGGCTGAGAATAATAAAGCCAAGCACTCGCTCTAgtttttctaaaaagaaaatccaatcCTTCTTCCTGAAGGGGTCACAAGGCCCAACTGGGAGAGCACACTGTGCCACACCAAACCTACATTGAAAACAGGGACCTACTTGAGGAACATGACAGTTTTAACACGACAAATACAACACAAGGGACATACTGTAGTTGTTCTTTTAGACTCATTAAACTGAGCTGGATCTGAACCCTAGTGGTCCAATATTTGAAGTCTTCAAAACATGGGTTTAAGAACCTACTGTGCCGCCAGTTTATGACCTTTTGTTAGTGAGAAATGCTCTTTTTAGAACCGGAATGAGgcgagagaagagaaaaaagaatcCCCCCCAACAAACTTCAGGACATGACCATATAATTGAAAAGGAAAGACTTGGAAGGAGGGTTGTGTGTGCAAACTGGGGGTCTTTTAATAAACGAGTGTTGAGCTGAGGATGCtacagaaaggagaaaaaaaattggacctttaaaataaataaacatcacttGTTAtgactaaaaaataaaataatcttaaaaaaataaaacaagcaccGCGAATGACTGCTCTTAGAAGCAGCTTGAAAAAGTATGAATTCCCTTCCTCTAAGTACtcaaatttctttttttttttttttatttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149585 True 2421 lncRNA 0.39 2 24537666 24599014

Neighbor

gene id symbol gene type direction distance location
AMCG00018876 NA coding upstream 159738 24372640 ~ 24377928 (+)
AMCG00018850 gucd1,LOC106585462 coding upstream 1666893 22862980 ~ 22870773 (+)
AMCG00018853 NA coding upstream 1702582 22820669 ~ 22835084 (+)
AMCG00018852 NA coding upstream 1721803 22807605 ~ 22815863 (+)
AMCG00018854 NA coding upstream 1730634 22800053 ~ 22807032 (+)
AMCG00018886 selenom,selm,LOC103043669 coding downstream 110660 24709674 ~ 24713528 (+)
AMCG00018899 NA coding downstream 485162 25084176 ~ 25090285 (+)
AMCG00018897 LOC106585468,LOC104958862 coding downstream 492117 25091131 ~ 25117419 (+)
AMCG00018908 NA coding downstream 537573 25136587 ~ 25144798 (+)
AMCG00018902 LOC103365013,LOC102776280 coding downstream 572471 25171485 ~ 25188842 (+)
G119324 NA non-coding upstream 15002 24459281 ~ 24522664 (+)
G119315 NA non-coding upstream 112310 24386596 ~ 24425356 (+)
G119308 NA non-coding upstream 170333 24357979 ~ 24367333 (+)
G119272 pitpnb,LOC107396064,LOC107653151,LOC107704163,LOC107706770 non-coding upstream 609034 23895027 ~ 23928632 (+)
G119234 NA non-coding upstream 1426146 23109601 ~ 23111520 (+)
G119416 NA non-coding downstream 200936 24799950 ~ 24835709 (+)
G119419 NA non-coding downstream 208733 24807747 ~ 24809819 (+)
G119429 NA non-coding downstream 251822 24850836 ~ 24851050 (+)
G119523 NA non-coding downstream 704172 25303186 ~ 25313495 (+)
G119529 LOC108239856,LOC103139559,LOC107385499,LOC103366907 non-coding downstream 732376 25331390 ~ 25338189 (+)
AMCG00018820 NA other upstream 2639966 21848370 ~ 21897700 (+)
G118815 NA other upstream 3348420 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 3765080 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 3842472 20679280 ~ 20695194 (+)
AMCG00018792 LOC106928543 other upstream 3934351 20601956 ~ 20603315 (+)
G119507 NA other downstream 635068 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 867077 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 1079663 25678677 ~ 25718426 (+)
G119762 NA other downstream 1861606 26460620 ~ 26461227 (+)

Expression


Co-expression Network