G119523


Basic Information

Item Value
gene id G119523
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25303186 ~ 25313495 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU149814
TGGGTATACCAgcagttttataatttttaatgcGAAAAGCCATGGCAACATCACACTGGAGAAAATGcatagaaacaaatatgtaaaccaTTCACATACATTATGGATGCAATCTCTTGCTAAACTAGATGCATTCAATGCAGGCGCTCTTCGTGTAAGGTTCGCTGCTGGGATGTGTACATTGCCACCTCTGATCACACTCCTAGAATCATCTATTGGCAAATATACAAGTCAGGCACCTGTtccttaaaatgtaaacaatcaaATACAGGTTTTCTagcttttattttgcaaataaaaacaaagaaacacttcATTCTAGAACattaccccccccacccaccccaccccccccaacatACACAATCCCCACAGtctttattaaacatgtatacaatagtttaaatgtggaaaatttGAACTCATGAGGTTTTATACAAGGTATTGCCAATGCTGGACAAAATTATGCaaggtatatatacacacaaacacacaaaagattTTCAGTGAGACAGAAGACGAGATTGAAATGAAATCATTCTCTAATGAAAAACTCTAAAGGTGTGATAAGTTACCAATacctgaagaaaaataaagagctATATTAGctttaagacagaaaacagacatgCCTTGAAGGAAAAGGGACCTTACATATTATACTACTAATGCTAGAGACatgcaacaaaaaaaacaatcctcttTAGAAAGTGTTACATGCCTTTACTTAAAGTGGAGCAACCTGCGTCTAGTACTGAAAGCTGCATAAGGAATCATCTTGAATAAGTGTCAcattcaaaagaaacaaaataaggcAAGGCATCTTGTTAAAAATgactaattataaaatgtatactggTGTTAAGCCAAGAAAAACGCTGATAAAGAGTCttaattcattttgttataGTGATAGTATGCACTCCCTTACAATGTGTGAAATTTACAGGGGATCAATGatctgaaatataaaattaaatgtgaaatggtGAAGTGTTAATAAGAGAAAGACAACATCTAAAAGAATTGCTTTATTCATTTGAAGTATACAGTACAGGAAGTGTGCTTAAAATACACCAATTCAGTGATGGGAGCAGATGGAATCATTATTACTTCTGATCACTACACAAGACAAGTGTGTCAAATGTGGGAAATAAAACTTAACTAAAATCCTTATGGGATCGTCTTTGCTTAGTTCTGAAGTTCATTCTATGCAAATACTTTTCACAGTGGTTTGAGCAGTTTGTGTTGGGTTCCATCATGTATAGTGGAAAAAACAGGCAGGTCTATTATCTGAAACCTGTTTGACTGATGCGTCTTCTCGGCTTCCAGCAAAGCACAATCCATTGGTGGCGGAgacatttacattgtaaaaagTGCTCTGAAATGTGTTGAAGACTGGCTGCAAACGAGTACATAAACCCAAAAGTTGTTGAAGAGAAAACAGCCATTGAAGTCTGAAGATCTAGAAAAATCTATTCACTTTCACCCTTTACCTTGAAGTAGCAGTCTTCTCAGTTGCTGTTGCAAATCGAACCAAacagtttttcatgtttgaGAAACCACTAGACGAGAAGTAAAATCTATTCCAAGCAAGCCAACcaataaaacattacagaaaaagggtaattttgtttaaaaatggagATTGTATGTTACAAGTCCACCAGGGCAATGCCAGCATGTCCTATTTTTTTTTTGCTTGCTTTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149814 True 1712 lncRNA 0.36 2 25303186 25313495

Neighbor

gene id symbol gene type direction distance location
AMCG00018909 NA coding upstream 9029 25287408 ~ 25294157 (+)
AMCG00018900 NA coding upstream 41904 25245645 ~ 25261282 (+)
AMCG00018901 LOC103152401,LOC106931442,LOC103469522,LOC102221826,LOC101074150,LOC101161315,LOC105014186,LOC106579958,LOC103397036 coding upstream 90031 25203672 ~ 25213155 (+)
AMCG00018902 LOC103365013,LOC102776280 coding upstream 114344 25171485 ~ 25188842 (+)
AMCG00018908 NA coding upstream 158388 25136587 ~ 25144798 (+)
AMCG00018915 NA coding downstream 220608 25534103 ~ 25544880 (+)
AMCG00018914 NA coding downstream 241961 25555456 ~ 25582394 (+)
AMCG00018918 mtfp1,LOC102779258 coding downstream 270821 25584316 ~ 25592691 (+)
AMCG00018919 NA coding downstream 288424 25601919 ~ 25611337 (+)
AMCG00018921 med13l coding downstream 315242 25628737 ~ 25642468 (+)
G119429 NA non-coding upstream 452136 24850836 ~ 24851050 (+)
G119416 NA non-coding upstream 467477 24799950 ~ 24835709 (+)
G119419 NA non-coding upstream 493367 24807747 ~ 24809819 (+)
G119354 NA non-coding upstream 704172 24537666 ~ 24599014 (+)
G119359 NA non-coding upstream 734202 24565712 ~ 24568984 (+)
G119529 LOC108239856,LOC103139559,LOC107385499,LOC103366907 non-coding downstream 17895 25331390 ~ 25338189 (+)
G119574 NA non-coding downstream 172350 25485845 ~ 25488149 (+)
G119669 NA non-coding downstream 725784 26039279 ~ 26078413 (+)
G119682 NA non-coding downstream 793974 26107469 ~ 26107849 (+)
G119684 NA non-coding downstream 799377 26112872 ~ 26113131 (+)
G119507 NA other upstream 35405 25234082 ~ 25267781 (+)
AMCG00018820 NA other upstream 3405486 21848370 ~ 21897700 (+)
G118815 NA other upstream 4113940 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 4530600 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 4607992 20679280 ~ 20695194 (+)
AMCG00018913 NA other downstream 152596 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 365182 25678677 ~ 25718426 (+)
G119762 NA other downstream 1147125 26460620 ~ 26461227 (+)

Expression


Co-expression Network